Repositories list

• swagger-java-sam-client

  Public
  swagger-java-sam-client

  0•0•0•1•Updated Mar 2, 2026Mar 2, 2026

• swagger-java-discourse-client

  Public
  swagger-java-discourse-client

  0•0•0•1•Updated Mar 2, 2026Mar 2, 2026

• swagger-java-bitbucket-client

  Public
  swagger-java-bitbucket-client

  0•0•0•1•Updated Mar 2, 2026Mar 2, 2026

• dockstore-cli

  Public
  Command-line interface to dockstore, split out from main repo in version 1.8.0

  Java

  •

  Apache License 2.0

  •3•4•0•1•Updated Mar 1, 2026Mar 1, 2026

• swagger-java-quay-client

  Public
  swagger-java-quay-client

  0•0•0•1•Updated Mar 1, 2026Mar 1, 2026

• dockstore

  Public
  An app store for scientific workflows, tools, notebooks, and services

  dockerworkflowbioinformatics+ 5nextflowcontainerswdlcwldockstore

  Java

  •

  Apache License 2.0

  •30•131•425•5•Updated Mar 1, 2026Mar 1, 2026

• azul

  Public
  Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

  Python

  •

  Apache License 2.0

  •3•0•0•1•Updated Mar 1, 2026Mar 1, 2026

• dockstore-ui2

  Public
  Website user interface for Dockstore in Angular2

  angularnextflowwdl+ 3cwlhacktoberfestdockstore

  TypeScript

  •

  Apache License 2.0

  •17•17•1•11•Updated Feb 27, 2026Feb 27, 2026

• dockstore-support

  Public
  A collection of different projects supporting the dockstore initiative

  Java

  •

  Apache License 2.0

  •1•2•0•0•Updated Feb 25, 2026Feb 25, 2026

• cwlavro

  Public
  Auto-generated Avro classes for manipulating CWL (starting with Java). Works with v1.0

  Java

  •

  Apache License 2.0

  •3•6•0•2•Updated Feb 13, 2026Feb 13, 2026

• extra-content

  Public
  A repo for external content, such as featured content

  hacktoberfest

  HTML

  •

  Apache License 2.0

  •2•0•0•0•Updated Feb 5, 2026Feb 5, 2026

• dockstore-documentation

  Public
  The documentation for Dockstore.org

  workflownextflowtool+ 4wdlcwlhacktoberfestdockstore

  Shell

  •

  Apache License 2.0

  •7•2•0•0•Updated Feb 4, 2026Feb 4, 2026

• compose_setup

  Public
  Demonstrate how to setup and run Dockstore using composed containers

  dockerdocker-compose

  Shell

  •

  Apache License 2.0

  •2•1•0•0•Updated Jan 21, 2026Jan 21, 2026

• openapi-java-invenio-client

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

• swagger-java-zenodo-client

  Public
  swagger-java-zenodo-client

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

• tool-registry-service-schemas

  Public
  APIs for discovering genomics tools, their metadata and their containers

  Shell

  •

  Apache License 2.0

  •18•0•0•7•Updated Dec 4, 2025Dec 4, 2025

• lambda

  Public
  Till we find a better solution, backup and document AWS lambdas

  awslambdadockstore

  Java

  •

  Apache License 2.0

  •2•1•0•4•Updated Nov 27, 2025Nov 27, 2025

• dockstore-tool-bamstats

  Public
  A repo for the BAMStats command, used as the tutorial for Dockstore

  Common Workflow Language

  •

  Apache License 2.0

  •72•0•0•1•Updated Nov 27, 2025Nov 27, 2025

• workflow-actions

  Public
  Resuable github actions (unfortunately called workflows)

  Apache License 2.0

  •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

• snakemake-language-interface

  Public
  Experimental implementation of support for Snakemake

  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Jul 28, 2025Jul 28, 2025

• dockstore-load-tester

  Public
  Dockstore Load/Performance/Stress Tester

  Scala

  •

  Apache License 2.0

  •0•3•0•0•Updated Jun 9, 2025Jun 9, 2025

• ng2-ui-auth

  Public
  an angular2 repository for authentication based on angular1's satellizer

  TypeScript

  •

  MIT License

  •63•0•0•5•Updated Sep 23, 2024Sep 23, 2024

• icgc-storage-client-plugin

  Public archive
  icgc storage client file provisioning plugin

  javaicgcdockstore+ 1file-provisioning

  Java

  •

  Apache License 2.0

  •1•0•1•0•Updated Aug 12, 2024Aug 12, 2024

• bcc2020-training

  Public
  Training materials for our BCC 2020 training workshop.

  dockernextflowwdl+ 5cwlhacktoberfestdockstorebccbosc

  Common Workflow Language

  •5•2•0•0•Updated Aug 9, 2024Aug 9, 2024

• example-notebook

  Public
  This repository contains a simple notebook example from Jupyter for running code.

  Jupyter Notebook

  •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• dockstore-trs-notebook

  Public
  This repository contains a notebook demonstrating how to use TRS.

  Jupyter Notebook

  •0•0•0•0•Updated Feb 8, 2024Feb 8, 2024

• .github

  Public
  default community health files

  Apache License 2.0

  •1•0•0•0•Updated Feb 1, 2024Feb 1, 2024

• maintenance-downtime-content

  Public
  HTML

  •

  Apache License 2.0

  •0•0•1•0•Updated Jan 12, 2024Jan 12, 2024

• hubflow

  Public
  A copy of hubflow for safe-keeping

  Shell

  •

  Other

  •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• zenodo-client

  Public archive
  A generated client for zenodo using a swagger (soon be openAPI) description

  javaswaggerzenodo+ 1dockstore

  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated Dec 13, 2023Dec 13, 2023