Repositories list

• bridge2ai-redcap

  Public
  Bridge2AI Voice | REDCap

  airedcapbridge2ai+ 1bridge2ai-voice

  MIT License

  •3•10•0•0•Updated Feb 27, 2026Feb 27, 2026

• voice-data-governance

  Public
  JavaScript

  •1•0•0•1•Updated Feb 27, 2026Feb 27, 2026

• DispatcherSuite

  Public
  A suite of microservices to interface different messaging systems.

  javamicroserviceskafka+ 5spring-bootjob-schedulerspring-cloudspring-kafkaazure-event-hubs

  Java

  •

  MIT License

  •0•0•0•2•Updated Feb 20, 2026Feb 20, 2026

• bioinformatics

  Public
  Tool including several common bioinformatics software applications

  dockerbioinformatics

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

• hello-mess-nf

  Public
  A Nextflow pipeline to experiment with DSL2 + Zero Mess

  nextflow-pipelinedsl2

  Nextflow

  •

  MIT License

  •1•4•0•1•Updated Jan 22, 2026Jan 22, 2026

• Unity-MRMotifs

  Public
  The developer community is beginning to show the world why Mixed Reality can be special. Developers come up with new mechanics that show why MR will be the best…

  C#

  •

  MIT License

  •45•0•0•0•Updated Jan 5, 2026Jan 5, 2026

• bridge2ai-docs

  Public archive
  Bridge2AI Voice | Documentation Dashboard

  pythonaistreamlit-dashboard+ 2bridge2aibridge2ai-voice

  Python

  •

  MIT License

  •6•2•0•1•Updated Dec 22, 2025Dec 22, 2025

• ERVmap

  Public
  ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.

  docker

  Perl

  •

  MIT License

  •15•1•0•0•Updated Jun 25, 2025Jun 25, 2025

• SalmonTE

  Public
  SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •23•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• beacon

  Public archive
  Dockerized GA4GH Beacon

  dockerbeacon

  HTML

  •

  MIT License

  •0•3•0•0•Updated Jun 11, 2025Jun 11, 2025

• STRIDES

  Public
  Supporting the Azure + NIH STRIDES initiative

  C#

  •

  MIT License

  •2•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• stork

  Public archive
  Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization

  pythondockermachine-learning+ 5aideep-learningtensorflowconvolutional-neural-networksivf

  Python

  •

  MIT License

  •3•6•0•2•Updated Jun 6, 2025Jun 6, 2025

• .github

  Public
  README for the Englander Institute for Precision Medicine Org Page

  0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• b2ai-peds-protocol

  Public
  2•0•0•0•Updated Aug 23, 2024Aug 23, 2024

• stork-v

  Public archive
  This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behin…

  dockermachine-learningai

  Python

  •5•5•0•9•Updated Jun 17, 2024Jun 17, 2024

• rnaseq-messaging

  Public
  RNAseq pipeline to demonstrate use of messaging

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• cnn-smoothie

  Public archive
  Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

  pythondockermachine-learning+ 5aideep-learningtensorflowcnnconvolutional-neural-networks

  Python

  •

  MIT License

  •1•1•0•5•Updated Oct 3, 2023Oct 3, 2023

• ai-biopsy

  Public archive
  Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging

  dockermachine-learningai+ 3deep-learningtensorflowconvolutional-neural-networks

  Python

  •

  MIT License

  •10•4•0•5•Updated Oct 3, 2023Oct 3, 2023

• stork-a

  Public archive
  dockermachine-learningai

  R

  •

  MIT License

  •3•0•0•4•Updated Oct 3, 2023Oct 3, 2023

• pmkb-bot

  Public archive
  PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.

  nodejsdockerai+ 13cancerazurebot-frameworkmicrosoft-bot-frameworkcancer-genomicsknowledgebasecortana+ 6

  JavaScript

  •

  MIT License

  •0•4•2•2•Updated Jun 22, 2022Jun 22, 2022

• bowtie2

  Public archive
  A fast and sensitive gapped read aligner

  C++

  •

  GNU General Public License v3.0

  •174•0•0•0•Updated Sep 20, 2021Sep 20, 2021

• picard

  Public archive
  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Java

  •

  MIT License

  •382•0•0•0•Updated Sep 17, 2021Sep 17, 2021

• hello-nextflow

  Public
  An hello world pipeline to test nextflow installations.

  groovynextflow-pipelines

  Nextflow

  •0•0•0•0•Updated May 26, 2021May 26, 2021

• CIN

  Public
  aiopenslidetensorflow2

  Python

  •

  MIT License

  •6•5•1•0•Updated Jan 15, 2021Jan 15, 2021

• omero-server-docker

  Public
  EIPM fork of OMERO.server production docker image, with OMERO.dropbox support added.

  omero

  Shell

  •32•0•0•0•Updated Nov 20, 2020Nov 20, 2020

• dgvar

  Public
  Screening deleterious germline variants (DGVs) in WCM UC cohort

  germline-variants

  Python

  •2•5•0•0•Updated Aug 10, 2020Aug 10, 2020

• unity-workshop

  Public
  R Lab XR in Healthcare Unity Workshop

  workshopunityvr+ 6oculusvirtual-realityhealthcarespatial-computingoculus-questai-xr-lab

  C#

  •

  MIT License

  •0•3•0•0•Updated Aug 7, 2020Aug 7, 2020

• paper_trail

  Public archive
  Track changes to your models' data. Good for auditing or versioning.

  Ruby

  •

  MIT License

  •912•0•0•0•Updated Aug 18, 2015Aug 18, 2015

• sunspot_autocomplete

  Public archive
  JavaScript

  •

  Other

  •15•0•0•0•Updated Mar 1, 2012Mar 1, 2012