Repositories list

• Data_on_AnVIL

  Public
  This is a guide to all the ways to access, upload, and use data on NHGRI's AnVIL platform.

  scalable-computing

  scalable-computing

  CSS

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  Creative Commons Attribution 4.0 International

  •1•0•15•1•Updated Mar 13, 2026Mar 13, 2026

• daseh_instructor_guide

  Public
  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•1•Updated Mar 12, 2026Mar 12, 2026

• Machine-Learning

  Public
  CSS

  •0•1•0•0•Updated Mar 11, 2026Mar 11, 2026

• Intro_to_Python

  Public
  The course covers fundamentals of Python, a high-level programming language, and use it to wrangle data for analysis and visualization.

  hutch-coursedata-science-programming

  hutch-coursedata-science-programming

  JavaScript

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  Creative Commons Attribution 4.0 International

  •0•1•1•1•Updated Mar 9, 2026Mar 9, 2026

• AnVIL_Collection

  Public
  📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects

  websiteanvilcontent-library+ 2

  websiteanvilcontent-librarygdscnedtech-software

  R

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  Creative Commons Attribution 4.0 International

  •1•0•1•1•Updated Mar 8, 2026Mar 8, 2026

• ITN_course_search

  Public
  A searchable table for ITN courses

  search-toolitn

  search-toolitn

  R

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  MIT License

  •0•0•7•1•Updated Mar 8, 2026Mar 8, 2026

• DaSL_Collection

  Public
  📚 An auto-generating library of Data Science Lab Github-based content

  websitecontent-library

  websitecontent-library

  CSS

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  MIT License

  •0•0•0•1•Updated Mar 8, 2026Mar 8, 2026

• AnVIL_Outreach_Metrics

  Public
  Metricminer Dashboard for the AnVIL Outreach Team and associated metrics

  R

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  MIT License

  •0•0•0•1•Updated Mar 8, 2026Mar 8, 2026

• AnVIL_Demos

  Public
  ⏱ 30-minute demos and tutorials from our live AnVIL series

  cloudcourseresearch+ 5

  cloudcourseresearchmodulegenomicscloud-computinganvilscalable-computing

  CSS

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  Creative Commons Attribution 4.0 International

  •2•0•0•2•Updated Mar 4, 2026Mar 4, 2026

• NIH_Data_Sharing

  Public
  Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associa…

  data-storagepolicybudgeting+ 12

  data-storagepolicybudgetingdata-managementdata-sharingnihgrant-proposalsgrant-submissionhutch-courseitn-course+ 5

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•7•0•Updated Mar 4, 2026Mar 4, 2026

• Intermediate_Python

  Public
  HTML

  •0•0•0•1•Updated Mar 4, 2026Mar 4, 2026

• Intermediate_R

  Public
  The course continues building programming fundamentals in R programming and data analysis. You will learn how to make use of complex data structures, use custom…

  hutch-coursedata-science-programming

  hutch-coursedata-science-programming

  JavaScript

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  Creative Commons Attribution 4.0 International

  •0•1•4•1•Updated Mar 3, 2026Mar 3, 2026

• GEMs

  Public
  💎 Materials & Portal for the Genomics Education Modules (GEMs) Program at Fred Hutch

  educationbioinformaticsgenomics+ 3

  educationbioinformaticsgenomicsentry-levelentry-level-bioinformaticsdata4all

  TeX

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  MIT License

  •0•0•52•1•Updated Mar 3, 2026Mar 3, 2026

• package-management-r-python

  Public
  JavaScript

  •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

• Proactive_Data_Management_and_Sharing

  Public
  Data management and sharing best practices for biomedical data handling folks

  securityprivacycourse+ 14

  securityprivacycoursereproducible-researchreproducible-sciencedata-managementreproducibilityhipaadata-sharingitn-course+ 7

  TeX

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  Creative Commons Attribution 4.0 International

  •0•0•1•0•Updated Mar 1, 2026Mar 1, 2026

• DataViz_Practice

  Public
  ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization

  data4all

  data4all

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•2•Updated Mar 1, 2026Mar 1, 2026

• Choosing_Genomics_Tools

  Public
  Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.

  coursedata-processinggenomic-data+ 7

  coursedata-processinggenomic-datadata-interpretationitn-courseaudience-researcherscategory-fundamentals-tools-resourcesresources-and-toolslaunched-aug2023data4all

  TeX

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  Creative Commons Attribution 4.0 International

  •7•17•34•1•Updated Mar 1, 2026Mar 1, 2026

• AI_for_Efficient_Programming

  Public
  This course on AI for software development explores the use of AI large language models (ChatGPT, Bard, etc) and their potential benefits and challenges. Hands-…

  coursechatbotartificial-intelligence+ 16

  coursechatbotartificial-intelligenceethicslearn-aillmsoftware-learninghutch-courseitn-courseaudience-researchers+ 9

  CSS

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  Creative Commons Attribution 4.0 International

  •1•4•11•0•Updated Mar 1, 2026Mar 1, 2026

• DataViz_Considerations

  Public
  ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization

  data4all

  data4all

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•31•2•Updated Mar 1, 2026Mar 1, 2026

• GitHub_Automation_for_Scientists

  Public
  This course walks through why's and the how's for using automation to boost scientific software development process.

  automationcoursereproducible-research+ 10

  automationcoursereproducible-researchtemplatesactivitiesreproducibilitytroubleshootinggithub-actionsitn-courseaudience-software-developers+ 3

  CSS

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  Creative Commons Attribution 4.0 International

  •2•1•4•0•Updated Mar 1, 2026Mar 1, 2026

• bench_to_bytes

  Public
  A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.

  data4all

  data4all

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•5•5•Updated Mar 1, 2026Mar 1, 2026

• reproducibility_capstone

  Public
  A capstone course for the ITN Reproducibility Series with hands-on activities

  dockerreproducible-researchreproducibility+ 10

  dockerreproducible-researchreproducibilityworkflow-automationcapstone-projectgithub-secretsgithub-actionsitn-courseaudience-researchersaudience-software-developers+ 3

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•3•0•Updated Mar 1, 2026Mar 1, 2026

• mcr_example_r

  Public
  R

  •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• DaSEH

  Public
  🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course

  data-sciencecoursetidyverse+ 9

  data-sciencecoursetidyversepublic-healthbeginnerbeginner-friendlyr-programmingniehsenvironmental-healthbeginner-programming+ 2

  HTML

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  MIT License

  •3•2•20•1•Updated Feb 26, 2026Feb 26, 2026

• dasl-snack-github

  Public
  A DaSL training "snack" covering the benefits and basics of using Git and GitHub to support your biomedical data science work.

  reproducible-researchhutch-course

  reproducible-researchhutch-course

  TeX

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  Creative Commons Attribution 4.0 International

  •0•0•2•3•Updated Feb 26, 2026Feb 26, 2026

• microbiome-poll

  Public
  TeX

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  MIT License

  •0•0•0•0•Updated Feb 26, 2026Feb 26, 2026

• making-code-ready

  Public
  Making code ready for publication workshop

  JavaScript

  •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

• bookrecs_winter_2026

  Public
  0•0•0•0•Updated Feb 22, 2026Feb 22, 2026

• mcr_example_python

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• gems_surveys

  Public
  💎 A collection of surveys for GEMs

  R

  •0•0•0•2•Updated Feb 16, 2026Feb 16, 2026