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    • Reading of single molecule genomics data formats into SummarizedExperiment objects
      R
      Other
      0000Updated Apr 17, 2026Apr 17, 2026
    • mutscan

      Public
      Software to process, statistically analyse and visualise deep mutational scanning data
      R
      Other
      01451Updated Apr 14, 2026Apr 14, 2026
    • Tips and tricks for intermediate ggplot2 usage
      HTML
      0010Updated Apr 13, 2026Apr 13, 2026
    • FMI CompBio's public GitHub repositories
      R
      1200Updated Apr 13, 2026Apr 13, 2026
    • sketchR

      Public
      An R interface to the subsampling algorithms implemented in python
      R
      Other
      0300Updated Apr 2, 2026Apr 2, 2026
    • HTML
      MIT License
      0000Updated Mar 31, 2026Mar 31, 2026
    • einprot

      Public
      Proteomics analysis workflows
      R
      Other
      11030Updated Mar 22, 2026Mar 22, 2026
    • QuasR

      Public
      This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creat…
      R
      3740Updated Mar 17, 2026Mar 17, 2026
    • A guide to analyzing single molecule footprinting data with R and footprintR
      TeX
      Creative Commons Attribution Share Alike 4.0 International
      0000Updated Feb 17, 2026Feb 17, 2026
    • HTML
      0100Updated Feb 1, 2026Feb 1, 2026
    • monaLisa

      Public
      binned motif enrichment analysis and visualisation
      R
      GNU General Public License v3.0
      74570Updated Jan 27, 2026Jan 27, 2026
    • HTML
      MIT License
      0000Updated Jan 12, 2026Jan 12, 2026
    • Tools for working with single-molecule footprinting data
      R
      Other
      0210Updated Jan 9, 2026Jan 9, 2026
    • ezzarr

      Public
      Thin wrapper around the ez_zarr python package.
      R
      Other
      0000Updated Nov 13, 2025Nov 13, 2025
    • eisaR

      Public
      Exon-Intron Split Analysis (EISA) in R
      R
      41700Updated Nov 3, 2025Nov 3, 2025
    • Rbowtie

      Public
      This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. Th…
      C++
      Other
      0100Updated Oct 30, 2025Oct 30, 2025
    • data from the TabulaMuris Senis project
      R
      Other
      3300Updated Oct 29, 2025Oct 29, 2025
    • Rhisat2

      Public
      R wrapper around the hisat2 aligner.
      C++
      GNU General Public License v3.0
      0300Updated Oct 29, 2025Oct 29, 2025
    • orthos

      Public
      Variance decomposition using conditional variational auto-encoders
      R
      Other
      0330Updated Oct 2, 2025Oct 2, 2025
    • ez_zarr

      Public
      GIve easy, high-level access to ome-zarr fileset
      Python
      MIT License
      22230Updated Sep 22, 2025Sep 22, 2025
    • Handy code shared in the FMI CompBio group
      R
      GNU General Public License v3.0
      1810Updated Sep 17, 2025Sep 17, 2025
    • Link to rendered reports:
      HTML
      MIT License
      0100Updated Jul 10, 2025Jul 10, 2025
    • Data package for `orthos` (https://github.com/fmicompbio/orthos)
      R
      Other
      0000Updated Jul 5, 2023Jul 5, 2023
    • Code used in the mutscan manuscript (analysis of datasets using mutscan, Enrich2 and DimSum, comparison and visualization)
      R
      MIT License
      0100Updated Oct 21, 2022Oct 21, 2022
    • Material for the "Advanced topics in single-cell analysis" course (2022 edition)
      HTML
      GNU General Public License v3.0
      51700Updated May 20, 2022May 20, 2022
    • configure packages for https://r-universe.dev/
      0010Updated Nov 25, 2021Nov 25, 2021
    • griph

      Public
      Graph Inference of Population Heterogeneity.
      R
      GNU General Public License v3.0
      3000Updated Nov 25, 2021Nov 25, 2021
    • CSS
      0100Updated Oct 26, 2020Oct 26, 2020
    • Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
      Jupyter Notebook
      91700Updated May 29, 2020May 29, 2020
    • SIB course teaching concepts for single-cell RNA-seq analysis
      HTML
      3700Updated Nov 29, 2018Nov 29, 2018
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