Hammer Lab

All

136 repositories

SmartCount
Public
Repository for collaboration on Celldom computer vision solutions
Jupyter Notebook
•
Apache License 2.0
•0•2•17•1•Updated Aug 2, 2024Aug 2, 2024
ppx_deriving_cmdliner
Public
Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
cli ocaml ppx
cli ocaml ppx command-line-parser ppx-extension
OCaml
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Apache License 2.0
•12•98•12•1•Updated Sep 12, 2023Sep 12, 2023
vcf-annotate-polyphen
Public
A tool to annotate human VCF files with PolyPhen2 effect measures
Python
•
Apache License 2.0
•6•10•2•3•Updated Dec 26, 2022Dec 26, 2022
flusso
Public
FCS (Flow Cytometry Standard) parser and utility
JavaScript
•
Apache License 2.0
•0•2•3•7•Updated Dec 9, 2022Dec 9, 2022
t-cell-relation-extraction
Public
Literature mining for T cell relations
Jupyter Notebook
•5•23•7•5•Updated Aug 5, 2022Aug 5, 2022
cytokit
Public
Microscopy Image Cytometry Toolkit
Jupyter Notebook
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Apache License 2.0
•18•114•11•4•Updated Jul 15, 2022Jul 15, 2022
flowdec
Public
TensorFlow Deconvolution for Microscopy Data
Jupyter Notebook
•
Apache License 2.0
•25•91•9•2•Updated Apr 29, 2022Apr 29, 2022
genspio
Public
Generate Shell Phrases In OCaml
shell ocaml edsl
shell ocaml edsl posix hacktoberfest
OCaml
•
Apache License 2.0
•3•47•16•0•Updated Dec 15, 2021Dec 15, 2021
tcr-transfer
Public
Explore an alternative way to clone TILs by first single-cell TCR-seq'ing them and then transforming non-exhausted T cells with these TIL TCRs
HTML
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Apache License 2.0
•0•0•6•1•Updated Nov 30, 2021Nov 30, 2021
biokepi
Public
Bioinformatics Ketrew Pipelines
ocaml bioinformatics-pipeline ketrew
ocaml bioinformatics-pipeline ketrew bioinformatics-ketrew-pipelines
OCaml
•
Apache License 2.0
•4•28•85•1•Updated Nov 14, 2021Nov 14, 2021
pileup.js
Public
Interactive in-browser track viewer
JavaScript
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Apache License 2.0
•62•280•79•4•Updated Oct 26, 2021Oct 26, 2021
slim
Public
Node server that listens to Spark events, aggregates statistics, and writes them to Mongo
JavaScript
•
Apache License 2.0
•5•10•9•0•Updated Apr 6, 2021Apr 6, 2021
spark-json-relay
Public
SparkListener that converts SparkListenerEvents to JSON and forwards them to an external service via RPC.
Scala
•
Apache License 2.0
•11•17•4•0•Updated Apr 6, 2021Apr 6, 2021
spree
Public
Live-updating Spark UI built with Meteor
JavaScript
•
Apache License 2.0
•29•190•22•1•Updated Apr 6, 2021Apr 6, 2021
sbt-parent
Public
SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
Scala
•
Apache License 2.0
•3•14•2•1•Updated Nov 13, 2020Nov 13, 2020
survivalstan
Public
Library of Stan Models for Survival Analysis
Jupyter Notebook
•
Apache License 2.0
•22•123•22•1•Updated Jul 15, 2020Jul 15, 2020
spheroid
Public
Training data, models, and analysis for 3D culture cytotoxicity assays with microscopy
Jupyter Notebook
•
Apache License 2.0
•0•0•0•0•Updated Nov 13, 2019Nov 13, 2019
prohlatype
Public
Probabilistic HLA typing
OCaml
•
Apache License 2.0
•4•35•12•0•Updated Aug 31, 2019Aug 31, 2019
awesome-clonality
Public
A curated list of awesome clonality and tumor heterogeneity resources
Apache License 2.0
•6•15•1•0•Updated Jun 25, 2019Jun 25, 2019
t-cell-activation
Public
Modeling bead based T cell activation to optimize ex vivo culturing conditions
Jupyter Notebook
•
Apache License 2.0
•1•0•0•0•Updated May 13, 2019May 13, 2019
t-cell-electroporation
Public
Code/Data repository for "Electroporation characteristics of human primary T cells"
Jupyter Notebook
•
Apache License 2.0
•0•1•2•0•Updated Apr 20, 2019Apr 20, 2019
dask-distributed-on-kubernetes
Public
Deploy dask-distributed on google container engine using kubernetes
Jupyter Notebook
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Apache License 2.0
•6•40•0•1•Updated Apr 15, 2019Apr 15, 2019
math-utils
Public
Math and statistics utilities
Scala
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Apache License 2.0
•1•7•0•0•Updated Feb 11, 2019Feb 11, 2019
pageant
Public
Parallel Genomic Analysis Toolkit
4•14•6•0•Updated Feb 11, 2019Feb 11, 2019
flowrepository-metadata-db
Public
R
•
Apache License 2.0
•0•0•0•0•Updated Jan 28, 2019Jan 28, 2019
stancache
Public
Filecache for stan models
reproducible-research filecache mcmc
reproducible-research filecache mcmc stan-model
Python
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Apache License 2.0
•1•1•4•0•Updated Jan 16, 2019Jan 16, 2019
magic-rdds
Public
Miscellaneous functionality for manipulating Apache Spark RDDs.
Scala
•5•22•1•0•Updated Dec 29, 2018Dec 29, 2018
spark-util
Public
low-level helpers for Apache Spark libraries and tests
scala spark hadoop
scala spark hadoop kryo
Scala
•
Apache License 2.0
•7•16•1•0•Updated Dec 29, 2018Dec 29, 2018
spark-tests
Public
Utilities for writing tests that use Apache Spark.
Scala
•
Apache License 2.0
•4•24•0•0•Updated Dec 29, 2018Dec 29, 2018
sbt-parent.g8
Public
giter8 template for the hammerlab/sbt-parent SBT plugin
Scala
•0•0•0•0•Updated Dec 28, 2018Dec 28, 2018