Repositories list

• app-pass

  Public
  Fix common issues in Mach-O binaries for notarization

  macosapplemach-o+ 6

  macosapplemach-omacosxgatekeepercodesigningapp-bundlesnotarizationapp-bundle

  Python

  •

  MIT License

  •1•3•2•0•Updated Mar 20, 2026Mar 20, 2026

• tiktorch

  Public
  Tiktorch

  Python

  •

  MIT License

  •10•12•42•5•Updated Mar 20, 2026Mar 20, 2026

• volumina

  Public
  Volume Slicing and Editing

  Python

  •

  Other

  •82•33•27•12•Updated Mar 20, 2026Mar 20, 2026

• ilastik

  Public
  ilastik-shell, applets, and workflows to string them together.

  pythonmachine-learningqt+ 1

  pythonmachine-learningqtilastik

  Python

  •

  Other

  •173•394•542•31•Updated Mar 20, 2026Mar 20, 2026

• ilastik4ij

  Public
  ImageJ plugins to run ilastik workflows

  Java

  •

  MIT License

  •18•27•23•6•Updated Mar 9, 2026Mar 9, 2026

• ilastik-napari

  Public
  ilastik plugin for napari

  ilastiknapari-plugin

  ilastiknapari-plugin

  Python

  •

  MIT License

  •3•14•3•2•Updated Mar 2, 2026Mar 2, 2026

• ilastik.github.io

  Public
  HTML

  •

  Other

  •18•3•22•9•Updated Feb 25, 2026Feb 25, 2026

• nature_methods_multicut_pipeline

  Public
  connectomicsneuron-segmentation

  connectomicsneuron-segmentation

  Python

  •

  Other

  •2•22•1•1•Updated Jan 6, 2026Jan 6, 2026

• conda-3rdparty

  Public
  extract license info for conda environments

  condalicense-managementlicenses+ 2

  condalicense-managementlicensesconda-environmentconda-packages

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 23, 2025Dec 23, 2025

• publish-conda-stack

  Public
  Scripts to update our published conda packages when our recipes have changed.

  Python

  •

  MIT License

  •3•0•1•0•Updated Nov 25, 2025Nov 25, 2025

• ilastiktools

  Public
  tools for carving

  C++

  •4•1•0•1•Updated Nov 24, 2025Nov 24, 2025

• hytra

  Public
  Python module for multi HYpotheses TRAcking

  trackingilastik

  trackingilastik

  Python

  •

  MIT License

  •7•2•5•1•Updated Nov 24, 2025Nov 24, 2025

• marching_cubes

  Public
  Standalone marching cubes implementation and Python bindings

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •14•100•3•2•Updated Nov 24, 2025Nov 24, 2025

• ndstructs

  Public
  Utility classes to deal with 5d arrays

  Python

  •

  MIT License

  •2•1•1•2•Updated Nov 24, 2025Nov 24, 2025

• ilastikrag

  Public
  ND Region Adjacency Graph with edge feature algorithms

  Jupyter Notebook

  •

  Other

  •2•0•0•1•Updated Nov 24, 2025Nov 24, 2025

• fastfilters2

  Public
  SIMD-accelerated 2D and 3D image features

  C++

  •

  MIT License

  •0•1•0•6•Updated Oct 27, 2025Oct 27, 2025

• ilastik-conda-recipes

  Public
  Conda recipes for building ilastik dependencies.

  Shell

  •16•9•7•0•Updated Aug 4, 2025Aug 4, 2025

• multiHypothesesTracking

  Public
  C++

  •

  MIT License

  •7•12•2•0•Updated Jun 10, 2025Jun 10, 2025

• dpct

  Public
  Dynamic Programming Cell Tracking Solver

  C++

  •

  MIT License

  •3•2•0•1•Updated May 7, 2025May 7, 2025

• webilastik

  Public
  A revision of classic ilastik to drop legacy stuff and make it portable

  Python

  •

  MIT License

  •3•8•9•0•Updated Apr 7, 2025Apr 7, 2025

• fastfilters

  Public
  fast gaussian and derivative convolutional filters

  C++

  •

  MIT License

  •9•1•0•0•Updated Mar 11, 2025Mar 11, 2025

• ilastiktools-fork

  Public
  tools for carving

  C++

  •4•0•0•1•Updated Mar 5, 2025Mar 5, 2025

• bioimage-io-resources

  Public
  resources for the BioImage.IO Model Zoo

  HTML

  •4•2•1•0•Updated Dec 16, 2024Dec 16, 2024

• cloud_ilastik

  Public
  APIs for running ilastik inside HPB infra

  Python

  •

  Other

  •0•1•15•3•Updated Nov 18, 2024Nov 18, 2024

• ilastik-oc-feats-cookiecutter

  Public
  cookiecutter for ilastik object feature plugins

  cookiecutterilastik

  cookiecutterilastik

  Python

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• unique-bincount-benchmark

  Public
  Python

  •4•0•0•0•Updated Sep 4, 2024Sep 4, 2024

• wsdt

  Public
  watershed on distance transform

  Python

  •1•5•0•1•Updated Dec 4, 2023Dec 4, 2023

• ilastik-feature-selection

  Public
  Select filter features with mutual-information-based methods

  Jupyter Notebook

  •

  MIT License

  •6•11•1•1•Updated Dec 4, 2023Dec 4, 2023

• neuroglancer

  Public
  WebGL-based viewer for volumetric data

  TypeScript

  •

  Apache License 2.0

  •351•0•0•0•Updated Aug 11, 2023Aug 11, 2023

• ilastikrag-fork

  Public
  ND Region Adjacency Graph with edge feature algorithms

  Jupyter Notebook

  •

  Other

  •2•0•0•0•Updated Aug 11, 2023Aug 11, 2023