ilastik

All

78 repositories

ilastik4ij
Public
ImageJ plugins to run ilastik workflows
Java
•
MIT License
•18•27•23•6•Updated Mar 9, 2026Mar 9, 2026
ilastik-napari
Public
ilastik plugin for napari
ilastik napari-plugin
ilastik napari-plugin
Python
•
MIT License
•3•14•3•2•Updated Mar 2, 2026Mar 2, 2026
app-pass
Public
Fix common issues in Mach-O binaries for notarization
macos apple mach-o
macos apple mach-o macosx gatekeeper codesigning app-bundles notarization app-bundle
Python
•
MIT License
•1•3•2•2•Updated Mar 2, 2026Mar 2, 2026
ilastik
Public
ilastik-shell, applets, and workflows to string them together.
python machine-learning qt
python machine-learning qt ilastik
Python
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Other
•173•391•550•32•Updated Feb 26, 2026Feb 26, 2026
ilastik.github.io
Public
HTML
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Other
•18•3•22•9•Updated Feb 25, 2026Feb 25, 2026
volumina
Public
Volume Slicing and Editing
Python
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Other
•82•33•27•12•Updated Feb 24, 2026Feb 24, 2026
tiktorch
Public
Tiktorch
Python
•
MIT License
•10•12•42•5•Updated Feb 24, 2026Feb 24, 2026
nature_methods_multicut_pipeline
Public
connectomics neuron-segmentation
connectomics neuron-segmentation
Python
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Other
•2•22•1•1•Updated Jan 6, 2026Jan 6, 2026
conda-3rdparty
Public
extract license info for conda environments
conda license-management licenses
conda license-management licenses conda-environment conda-packages
Python
•
MIT License
•0•0•0•0•Updated Dec 23, 2025Dec 23, 2025
publish-conda-stack
Public
Scripts to update our published conda packages when our recipes have changed.
Python
•
MIT License
•3•0•1•0•Updated Nov 25, 2025Nov 25, 2025
ilastiktools
Public
tools for carving
C++
•4•1•0•1•Updated Nov 24, 2025Nov 24, 2025
hytra
Public
Python module for multi HYpotheses TRAcking
tracking ilastik
tracking ilastik
Python
•
MIT License
•7•2•5•1•Updated Nov 24, 2025Nov 24, 2025
marching_cubes
Public
Standalone marching cubes implementation and Python bindings
C++
•
BSD 3-Clause "New" or "Revised" License
•14•100•3•2•Updated Nov 24, 2025Nov 24, 2025
ndstructs
Public
Utility classes to deal with 5d arrays
Python
•
MIT License
•2•1•1•2•Updated Nov 24, 2025Nov 24, 2025
ilastikrag
Public
ND Region Adjacency Graph with edge feature algorithms
Jupyter Notebook
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Other
•2•0•0•1•Updated Nov 24, 2025Nov 24, 2025
fastfilters2
Public
SIMD-accelerated 2D and 3D image features
C++
•
MIT License
•0•1•0•6•Updated Oct 27, 2025Oct 27, 2025
ilastik-conda-recipes
Public
Conda recipes for building ilastik dependencies.
Shell
•16•9•7•0•Updated Aug 4, 2025Aug 4, 2025
multiHypothesesTracking
Public
C++
•
MIT License
•7•12•2•0•Updated Jun 10, 2025Jun 10, 2025
dpct
Public
Dynamic Programming Cell Tracking Solver
C++
•
MIT License
•3•2•0•1•Updated May 7, 2025May 7, 2025
webilastik
Public
A revision of classic ilastik to drop legacy stuff and make it portable
Python
•
MIT License
•3•8•9•0•Updated Apr 7, 2025Apr 7, 2025
fastfilters
Public
fast gaussian and derivative convolutional filters
C++
•
MIT License
•9•1•0•0•Updated Mar 11, 2025Mar 11, 2025
ilastiktools-fork
Public
tools for carving
C++
•4•0•0•1•Updated Mar 5, 2025Mar 5, 2025
bioimage-io-resources
Public
resources for the BioImage.IO Model Zoo
HTML
•4•2•1•0•Updated Dec 16, 2024Dec 16, 2024
cloud_ilastik
Public
APIs for running ilastik inside HPB infra
Python
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Other
•0•1•15•3•Updated Nov 18, 2024Nov 18, 2024
ilastik-oc-feats-cookiecutter
Public
cookiecutter for ilastik object feature plugins
cookiecutter ilastik
cookiecutter ilastik
Python
•0•0•0•0•Updated Oct 24, 2024Oct 24, 2024
unique-bincount-benchmark
Public
Python
•4•0•0•0•Updated Sep 4, 2024Sep 4, 2024
wsdt
Public
watershed on distance transform
Python
•1•5•0•1•Updated Dec 4, 2023Dec 4, 2023
ilastik-feature-selection
Public
Select filter features with mutual-information-based methods
Jupyter Notebook
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MIT License
•6•11•1•1•Updated Dec 4, 2023Dec 4, 2023
neuroglancer
Public
WebGL-based viewer for volumetric data
TypeScript
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Apache License 2.0
•348•0•0•0•Updated Aug 11, 2023Aug 11, 2023
ilastikrag-fork
Public
ND Region Adjacency Graph with edge feature algorithms
Jupyter Notebook
•
Other
•2•0•0•0•Updated Aug 11, 2023Aug 11, 2023