Repositories list

• bam.iobio.io

  Public
  https://bam.iobio.io

  Vue

  •

  MIT License

  •19•47•65•12•Updated Mar 25, 2026Mar 25, 2026

• iobio-gru-backend

  Public
  JavaScript

  •7•7•8•7•Updated Mar 24, 2026Mar 24, 2026

• calypso_pipeline

  Public
  Python

  •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

• gene.iobio

  Public
  Gene.iobio vue

  JavaScript

  •

  MIT License

  •12•69•66•15•Updated Mar 13, 2026Mar 13, 2026

• pheno-plus

  Public
  SMART on FHIR EMR app for retrieving Human Phenotype Ontology terms directly from medical record notes

  Vue

  •0•0•0•0•Updated Mar 5, 2026Mar 5, 2026

• bam.iobio

  Public
  bam.iobio version 2.0

  HTML

  •

  Other

  •0•3•5•1•Updated Jan 19, 2026Jan 19, 2026

• rnasplice.iobio

  Public
  Visualize short-read RNA splice events

  Vue

  •0•2•27•0•Updated Dec 19, 2025Dec 19, 2025

• sv.iobio.be

  Public
  Backend services for testing & stand alone service to sv.iobio

  JavaScript

  •0•0•1•2•Updated Nov 18, 2025Nov 18, 2025

• pheno_matcher_be_rust

  Public
  Backend for the SimPheny project. Implemented in Rust for speed.

  Rust

  •0•0•0•2•Updated Nov 18, 2025Nov 18, 2025

• sv.iobio

  Public
  An interactive tool designed to assist with visualizing and analyzing structural variants (SVs) from variant call files (VCFs)

  Vue

  •

  MIT License

  •1•5•9•1•Updated Nov 15, 2025Nov 15, 2025

• SimPheny.iobio

  Public
  A web application for patient to patient phenotype matching.

  Vue

  •0•3•4•0•Updated Oct 22, 2025Oct 22, 2025

• iobio-charts

  Public
  JavaScript

  •1•0•25•2•Updated Oct 21, 2025Oct 21, 2025

• oncogene

  Public
  Cancer tailored version of gene.iobio

  JavaScript

  •1•2•195•7•Updated Oct 7, 2025Oct 7, 2025

• genepanel.iobio

  Public
  Genepanel.iobio: generate list of genes based on suspected conditions and phenotypes.

  genomics

  genomics

  JavaScript

  •3•11•84•2•Updated Oct 7, 2025Oct 7, 2025

• vcf.iobio.io

  Public
  JavaScript

  •

  MIT License

  •10•28•37•3•Updated Oct 7, 2025Oct 7, 2025

• cohort-gene

  Public
  JavaScript

  •0•1•37•14•Updated Oct 7, 2025Oct 7, 2025

• clin.iobio

  Public
  Clin.iobio - Workflow and reporting for iobio variant analysis pipeline

  JavaScript

  •5•12•80•20•Updated Oct 7, 2025Oct 7, 2025

• ddn-db-builder

  Public
  Rust

  •0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

• clinvar-db-builder

  Public
  Rust

  •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• gene_phenotype_associations

  Public
  Python scripts to load gene-to-phenotype db to supply gene to HPO terms (phenotypes) and gene to disease assocations.

  Python

  •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

• sv_pipeline_work

  Public
  A pipeline for annotating and QC filtering structural variants.

  Shell

  •0•1•0•0•Updated Mar 11, 2025Mar 11, 2025

• iobio-backend-services

  Public
  JavaScript

  •0•0•2•0•Updated Jan 16, 2025Jan 16, 2025

• iobio.viz

  Public
  Visualization and charting JS library for streaming genomic data

  JavaScript

  •

  MIT License

  •2•19•2•0•Updated Dec 4, 2024Dec 4, 2024

• phenotype-extractor-vue

  Public
  A library for "select phenotypes" feature of clin.iobio

  JavaScript

  •0•1•1•5•Updated Oct 25, 2024Oct 25, 2024

• gru-testing

  Public
  Python

  •0•0•0•0•Updated May 29, 2024May 29, 2024

• geneinfo.db

  Public
  This is project for rebuilding gene model by python

  Python

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• timeline

  Public
  JavaScript

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• pheno-plus-whitelist

  Public
  A background service that keeps a whitelist json for our pheno+ applicaiton up to date. This is a service for testing only.

  JavaScript

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• patient_portal

  Public
  This is a patient portal project for Calypso and UDN

  Vue

  •0•0•2•0•Updated Apr 18, 2024Apr 18, 2024

• diff-express.viz

  Public
  An application for genetic differential expression dataset visualization.

  Vue

  •0•0•0•0•Updated Feb 13, 2024Feb 13, 2024