Repositories list

• knowledgesystems-k8s-deployment

  Public
  Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

  CSS

  •31•13•24•4•Updated Feb 19, 2026Feb 19, 2026

• cmo-pipelines

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •11•3•54•17•Updated Feb 18, 2026Feb 18, 2026

• reVUE

  Public
  repository for Variants with Unexpected Effects (in cancer)

  TypeScript

  •

  MIT License

  •2•1•4•0•Updated Oct 2, 2025Oct 2, 2025

• reVUE-data

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•5•1•Updated Oct 2, 2025Oct 2, 2025

• cancer-cell-portal-utils

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• curation-scrum

  Public
  Used for issue tracking of data curation efforts.

  0•0•39•0•Updated Jan 8, 2025Jan 8, 2025

• signal

  Public
  Somatic Integration of Germline Alterations in cancer

  TypeScript

  •

  MIT License

  •5•2•18•7•Updated Mar 4, 2023Mar 4, 2023

• pipelines-scrum

  Public
  Repository for tracking uncategorizable issues related to backend pipelines work

  0•0•26•0•Updated Aug 19, 2021Aug 19, 2021

• vcf2maf

  Public
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Perl

  •

  Other

  •221•0•0•1•Updated Apr 6, 2020Apr 6, 2020

• pipelines-dashboard

  Public
  Repository for MSK import pipelines dashboard

  0•0•0•0•Updated Jun 11, 2019Jun 11, 2019

• mutationhotspots

  Public
  Algorithms to detect mutational hotspots

  sciencebig-datacancer-genomics+ 1precision-medicine

  Java

  •

  MIT License

  •4•9•0•0•Updated Aug 1, 2018Aug 1, 2018

• oncokb-curation

  Public archive
  OncoKB curation website web module

  JavaScript

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 7, 2016Jun 7, 2016