Repositories list

• linkml-microschema-profile

  Public
  LinkML schema for CDEs

  Just

  •

  MIT License

  •1•2•0•5•Updated Mar 1, 2026Mar 1, 2026

• valuesets

  Public

  linkml/valuesets’s past year of commit activity
  Common value sets (enums) for science, biomedicine, computing, and other areas

  semanticsstandardsmonarchinitiative+ 4fair-datalinkmlvalue-setsai4curation

  Python

  •

  Apache License 2.0

  •0•12•5•7•Updated Mar 1, 2026Mar 1, 2026

• linkml-model

  Public

  linkml/linkml-model’s past year of commit activity
  Link Modeling Language (LinkML) model

  yamlmetadatajson+ 12linked-datajson-schemaumlsemantic-webmetamodelschema-languagedata-integration+ 5

  Python

  •

  Creative Commons Zero v1.0 Universal

  •22•67•1•15•Updated Mar 1, 2026Mar 1, 2026

• linkml-project-copier

  Public

  linkml/linkml-project-copier’s past year of commit activity
  A copier template for your next LinkML project

  templateschemacopier+ 3monarchinitiativelinkmlai4curation

  Python

  •

  MIT License

  •7•11•10•1•Updated Mar 1, 2026Mar 1, 2026

• linkml

  Public

  linkml/linkml’s past year of commit activity
  Linked Open Data Modeling Language

  schemalinked-datajson-schema+ 13rdfmodelingsemantic-webowlstandardsdata-modelinghacktoberfest+ 6

  Python

  •

  Apache License 2.0

  •152•470•638•65•Updated Mar 1, 2026Mar 1, 2026

• dm-bip

  Public

  linkml/dm-bip’s past year of commit activity
  Data Model Based Ingestion Pipeline

  Jupyter Notebook

  •

  MIT License

  •0•13•38•2•Updated Feb 27, 2026Feb 27, 2026

• linkml-map

  Public

  linkml/linkml-map’s past year of commit activity
  Mapping between LinkML schemas

  etlmappingmonarchinitiative+ 3linkmldata-model-mappingai4curation

  Python

  •

  Other

  •4•31•20•6•Updated Feb 26, 2026Feb 26, 2026

• linkml-term-validator

  Public

  linkml/linkml-term-validator’s past year of commit activity
  Validating LinkML schemas and datasets that depend on external terms

  validationontologiesobofoundry+ 1linkml

  Python

  •

  Apache License 2.0

  •0•5•4•6•Updated Feb 26, 2026Feb 26, 2026

• linkml-store

  Public
  wrapper for multiple linkml storage engines

  mongomongodbrdf+ 10data-lakehdf5nosql-databasetriplestoredatabase-wrapperdata-stacksemweb+ 3

  Python

  •

  MIT License

  •3•24•3•2•Updated Feb 25, 2026Feb 25, 2026

• linkml-reference-validator

  Public
  Validate that supporting text quotes in your data actually appear in their cited references

  pubmedmonarchinitiativelinkml+ 3agentic-aiai-guardrailsai4curation

  Python

  •

  Apache License 2.0

  •0•11•3•3•Updated Feb 25, 2026Feb 25, 2026

• nsrr-sleep-cde-schema

  Public

  linkml/nsrr-sleep-cde-schema’s past year of commit activity
  Python

  •

  MIT License

  •0•1•0•6•Updated Feb 25, 2026Feb 25, 2026

• linkml-registry

  Public
  Registry of schemas that use LinkML

  registryschema-registryschemas+ 1linkml

  Python

  •

  Apache License 2.0

  •5•15•1•1•Updated Feb 23, 2026Feb 23, 2026

• prefixmaps

  Public
  Semantic prefix map registry

  obofoundrybioregistrylinkml+ 1prefixmaps

  Python

  •

  Apache License 2.0

  •4•13•11•1•Updated Feb 20, 2026Feb 20, 2026

• schema-automator

  Public
  Automated assistance for the schema development lifecycle

  pythontoolslinked-data+ 8owlspreadsheetsdata-modelingschema-inferencecsvslinkmlincatools+ 1

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•55•42•4•Updated Feb 19, 2026Feb 19, 2026

• linkml-tutorial

  Public
  tutoriallinkml

  Python

  •

  MIT License

  •1•8•0•0•Updated Feb 12, 2026Feb 12, 2026

• linkml.github.io

  Public
  Website/splash page for main LinkML project

  jekyllwebsitedata-modeling+ 2splash-pagelinkml

  HTML

  •

  MIT License

  •6•1•0•1•Updated Feb 11, 2026Feb 11, 2026

• linkml-browser

  Public
  javascriptpythonstatic-site-generator+ 2user-interfacelinkml

  HTML

  •0•5•1•6•Updated Feb 11, 2026Feb 11, 2026

• .github

  Public
  2•0•0•0•Updated Feb 4, 2026Feb 4, 2026

• schemasheets

  Public
  Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

  metadataschemasspreadsheets+ 6shexshaclfair-datalinkmlshape-languagessheets2linkml

  Python

  •

  Apache License 2.0

  •5•49•30•0•Updated Feb 4, 2026Feb 4, 2026

• linkml-embeddings-explorer

  Public

  linkml/linkml-embeddings-explorer’s past year of commit activity
  Visualization of embeddings of linkml-compliant datasets

  visualizationembeddingslinkml

  Python

  •

  MIT License

  •0•1•0•5•Updated Jan 27, 2026Jan 27, 2026

• linkml-owl

  Public

  linkml/linkml-owl’s past year of commit activity
  Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)

  templatesdesign-patternsowl+ 9ontologiesontology-generationontology-design-patternsmetaclasseslinkmljson2owlyaml2owl+ 2

  Python

  •2•17•13•0•Updated Jan 8, 2026Jan 8, 2026

• linkml-runtime

  Public
  Runtime support for linkml generated models

  pythonconversionhacktoberfest+ 4object-modelinstanceslinkmllinkml-runtime

  Python

  •

  Creative Commons Zero v1.0 Universal

  •34•43•1•24•Updated Dec 10, 2025Dec 10, 2025

• linkml-data-qc

  Public
  A compliance analysis tool for LinkML data files

  data-engineeringfair-datadata-qc+ 1linkml

  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Dec 8, 2025Dec 8, 2025

• linkml-tutorial-2024

  Public archive
  Python

  •

  MIT License

  •0•2•0•0•Updated Nov 5, 2025Nov 5, 2025

• linkml-tutorial-2025

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•5•Updated Nov 5, 2025Nov 5, 2025

• linkml-project-cookiecutter

  Public archive
  A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.

  Python

  •

  Creative Commons Zero v1.0 Universal

  •19•27•19•0•Updated Oct 23, 2025Oct 23, 2025

• linkml-solr

  Public
  Simple wrapper for using Solr with LinkML schemas

  metadatasolrlinkml

  Python

  •1•5•1•0•Updated Sep 11, 2025Sep 11, 2025

• pyjsg

  Public
  PyJSG -- JSON Schema Grammar bindings for Python

  Python

  •

  Creative Commons Zero v1.0 Universal

  •3•3•8•3•Updated Sep 4, 2025Sep 4, 2025

• cmdr

  Public
  Python

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  MIT License

  •0•6•3•0•Updated Aug 9, 2025Aug 9, 2025

• linkml-arrays

  Public

  linkml/linkml-arrays’s past year of commit activity
  Support for loading and dumping N-dimensional arrays in LinkML.

  linked-datanumpyarrays+ 4multidimensional-arrayszarrlinkmlhdmf

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•6•7•4•Updated Jan 18, 2025Jan 18, 2025