Repositories list

• beekeeper

  Public
  Managing video metadata for animal behaviour experiments

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•0•1•2•Updated Sep 17, 2025Sep 17, 2025

• NeuroBlueprint

  Public
  Lightweight data specification for systems neuroscience, inspired by BIDS.

  Creative Commons Attribution 4.0 International

  •4•19•11•1•Updated Sep 17, 2025Sep 17, 2025

• datashuttle

  Public
  Tool for the creation, validation and transfer of neuroscience project folders.

  neurosciencedata-managementneuroblueprint

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22•26•45•9•Updated Sep 17, 2025Sep 17, 2025

• spikewrap

  Public
  A package to manage electrophysiology analysis.

  electrophysiologyneuropixelsextracellular-electrophysiology

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •15•23•21•5•Updated Sep 15, 2025Sep 15, 2025

• neuroinformatics-unit.github.io

  Public
  Home website of the Neuroinformatics Unit

  BSD 3-Clause "New" or "Revised" License

  •4•12•7•1•Updated Sep 15, 2025Sep 15, 2025

• zebras-stitching

  Public
  Exploring how to stitch drone imagery and animal trajectories

  Python

  •3•2•1•0•Updated Sep 12, 2025Sep 12, 2025

• ethology

  Public
  Mix-and-match computer vision tools for your animal behaviour analysis

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •18•18•25•10•Updated Sep 11, 2025Sep 11, 2025

• scripts

  Public
  Small but useful scripts to share

  Python

  •0•7•0•1•Updated Sep 11, 2025Sep 11, 2025

• translocator-models

  Public archive
  Evaluate the model for the translocator project

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Sep 11, 2025Sep 11, 2025

• derotation

  Public
  Derotate images acquired via multiphoton calcium imaging

  neurosciencecalcium-imagingneuroscience-methods

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•7•4•0•Updated Sep 11, 2025Sep 11, 2025

• .github

  Public
  MIT License

  •0•6•0•0•Updated Sep 11, 2025Sep 11, 2025

• actions

  Public
  Re-usable GitHub Action scripts

  MIT License

  •5•12•7•1•Updated Sep 11, 2025Sep 11, 2025

• python-cookiecutter

  Public
  Utility to create a basic Python project structure with tests, CI etc.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•32•11•0•Updated Sep 8, 2025Sep 8, 2025

• slurmio

  Public
  Python tools to read SLURM job parameters.

  Python

  •

  MIT License

  •1•8•0•0•Updated Sep 5, 2025Sep 5, 2025

• probe-anatomy-alignment

  Public
  A project for prototyping extracellular electrophysiology probe and anatomy alignment. Eventually this should be subsumed into spikeinterface / brainglobe.

  Python

  •

  MIT License

  •0•2•0•0•Updated Sep 2, 2025Sep 2, 2025

• movement

  Public
  A Python toolbox for analysing animal body movements across space and time

  behaviorkinematicsneuroscience+ 4behaviouranimalmotion-trackingethology

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •70•195•111•34•Updated Sep 2, 2025Sep 2, 2025

• swc-slack

  Public
  Tools to interface with slack

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•7•0•0•Updated Sep 2, 2025Sep 2, 2025

• fancylog

  Public
  Fancier logging with python.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•14•11•2•Updated Sep 2, 2025Sep 2, 2025

• qt-niu

  Public
  Reusable Qt elements

  Python

  •

  MIT License

  •0•3•0•0•Updated Sep 2, 2025Sep 2, 2025

• course-animals-in-motion

  Public
  A handbook about open-source tools for tracking animals in videos and quantifying behaviour.

  pythonbehaviortracking+ 5motionhandbookanimalsmovementquarto

  TeX

  •

  Creative Commons Attribution 4.0 International

  •0•3•3•0•Updated Aug 18, 2025Aug 18, 2025

• slides-osw25-intro

  Public archive
  Shared introductory slides to use at the start of each day at OSW

  SCSS

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Aug 15, 2025Aug 15, 2025

• pretty-bugs

  Public archive
  Collections of cool screenshots of students' work

  Creative Commons Attribution 4.0 International

  •0•0•0•2•Updated Aug 14, 2025Aug 14, 2025

• slides-big-imaging-data-osw25

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• smart-kages-movement

  Public
  Using the movement package to analysing mouse home cage monitoring data acquired in Smart-Kages and tracked with DeepLabCut.

  trackingmousebehaviour+ 1movement

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•3•1•0•Updated Aug 6, 2025Aug 6, 2025

• osw25-hackday

  Public archive
  A place to create and discuss ideas for the 2025 Open Software Week hackathon

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Aug 1, 2025Aug 1, 2025

• sphinx-deployment-test

  Public
  A "toy" website repository for testing our sphinx build and deploy GitHub actions

  Creative Commons Attribution 4.0 International

  •1•0•0•1•Updated Jul 28, 2025Jul 28, 2025

• photon-mosaic

  Public
  Automated and reproducible analysis of multiphoton calcium imaging datasets

  neuroscienceneuroscience-methods

  Python

  •

  GNU General Public License v3.0

  •1•7•14•0•Updated Jul 24, 2025Jul 24, 2025

• suite2p

  Public
  cell detection in calcium imaging recordings

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •259•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• artifact.ci

  Public
  🗿 view github artifacts in your browser

  TypeScript

  •

  Apache License 2.0

  •3•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• HowTo

  Public
  NIU website on common software problems and their troubleshooting

  Creative Commons Attribution 4.0 International

  •1•10•11•0•Updated Jul 22, 2025Jul 22, 2025