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    80 repositories

    • poseinterface

      Public
      Run pose estimation across frameworks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•8•1•Updated Mar 26, 2026Mar 26, 2026

    • OSCaR

      Public
      A python package for breeding scheme calculations.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•12•1•Updated Mar 26, 2026Mar 26, 2026

    • dashboard

      Public
      Overview of all Neuroinformatics Unit repos
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•4•3•0•Updated Mar 26, 2026Mar 26, 2026

    • movement

      Public
      A Python toolbox for analysing animal body movements across space and time
      behaviorkinematicsneuroscience
      behaviorkinematicsneurosciencebehaviouranimalmotion-trackingethology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •132•268•123•74•Updated Mar 25, 2026Mar 25, 2026

    • ethology

      Public
      Mix-and-match computer vision tools for your animal behaviour analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•28•28•20•Updated Mar 24, 2026Mar 24, 2026

    • smart-kages-movement

      Public
      Using the movement package to analysing mouse home cage monitoring data acquired in Smart-Kages and tracked with DeepLabCut.
      trackingmousebehaviour
      trackingmousebehaviourmovement
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•1•0•Updated Mar 24, 2026Mar 24, 2026

    • spikewrap

      Public
      A package to manage electrophysiology analysis.
      electrophysiologyneuropixelsextracellular-electrophysiology
      electrophysiologyneuropixelsextracellular-electrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•23•23•5•Updated Mar 23, 2026Mar 23, 2026

    • driftmap_viewer

      Public
      Viewing drift-maps in Kilosort
      Python
      •
      MIT License
      •0•1•0•4•Updated Mar 23, 2026Mar 23, 2026

    • datashuttle

      Public
      Tool for the creation, validation and transfer of neuroscience project folders.
      neurosciencedata-managementneuroblueprint
      neurosciencedata-managementneuroblueprint
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•35•48•11•Updated Mar 19, 2026Mar 19, 2026

    • neuroinformatics-unit.github.io

      Public
      Home website of the Neuroinformatics Unit
      BSD 3-Clause "New" or "Revised" License
      •8•14•8•0•Updated Mar 17, 2026Mar 17, 2026

    • zebras-stitching

      Public
      Exploring how to stitch drone imagery and animal trajectories
      Python
      •
      MIT License
      •3•4•1•0•Updated Mar 15, 2026Mar 15, 2026

    • derotation

      Public
      Derotate images acquired via multiphoton calcium imaging
      neurosciencecalcium-imagingneuroscience-methods
      neurosciencecalcium-imagingneuroscience-methods
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•17•5•3•Updated Mar 6, 2026Mar 6, 2026

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•38•13•2•Updated Mar 3, 2026Mar 3, 2026

    • swc-slack

      Public
      Tools to interface with slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•0•0•Updated Mar 2, 2026Mar 2, 2026

    • slurmio

      Public
      Python tools to read SLURM job parameters.
      Python
      •
      MIT License
      •1•8•0•0•Updated Mar 2, 2026Mar 2, 2026

    • fancylog

      Public
      Fancier logging with python.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•16•11•3•Updated Mar 2, 2026Mar 2, 2026

    • qt-niu

      Public
      Reusable Qt elements
      Python
      •
      MIT License
      •0•6•0•0•Updated Mar 2, 2026Mar 2, 2026

    • actions

      Public
      Re-usable GitHub Action scripts
      MIT License
      •5•14•8•1•Updated Mar 2, 2026Mar 2, 2026

    • scripts

      Public
      Small but useful scripts to share
      Python
      •0•7•0•1•Updated Feb 18, 2026Feb 18, 2026

    • HowTo

      Public
      NIU website on common software problems and their troubleshooting
      Creative Commons Attribution 4.0 International
      •1•10•13•2•Updated Feb 13, 2026Feb 13, 2026

    • slides-trusted-by-design

      Public
      Slides for the "Trusted by design" talk, presented at FOSDEM 2026.
      Lua
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

    • course-animals-in-motion

      Public
      A handbook about open-source tools for tracking animals in videos and quantifying behaviour.
      pythonbehaviortracking
      pythonbehaviortrackingmotionhandbookanimalsmovementquarto
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•7•8•0•Updated Jan 30, 2026Jan 30, 2026

    • slides-movement-fosdem2026

      Public
      Slides about `movement`, presented at FOSDEM 2026.
      Lua
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • course-ephys-osss

      Public
      A repository to plan the extracellular electrophysiology course for OSSS 2026
      Creative Commons Attribution 4.0 International
      •0•0•3•0•Updated Jan 20, 2026Jan 20, 2026

    • NeuroBlueprint

      Public
      Lightweight data specification for systems neuroscience, inspired by BIDS.
      Creative Commons Attribution 4.0 International
      •5•21•13•1•Updated Dec 16, 2025Dec 16, 2025

    • slides-NIU-presentation-Japan-visitors

      Public
      Presenting the NIU to a team from Japan, reduced version of previous Tea Hour slides
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Dec 15, 2025Dec 15, 2025

    • slides-movement-cbias2025

      Public
      Slides about `movement`, presented at CBIAS 2025
      TeX
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Nov 23, 2025Nov 23, 2025

    • beekeeping

      Public
      Managing video metadata for animal behaviour experiments
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•0•0•Updated Nov 18, 2025Nov 18, 2025

    • course-extracellular-ephys-analysis

      Public
      Covering how to build electrophysiology pipelines with SpikeInterface
      Python
      •
      MIT License
      •0•5•1•0•Updated Nov 4, 2025Nov 4, 2025

    • software-skills

      Public
      Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
      Creative Commons Attribution 4.0 International
      •0•8•0•0•Updated Oct 30, 2025Oct 30, 2025
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