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    73 repositories

    • datashuttle

      Public
      Tool for the creation, validation and transfer of neuroscience project folders.
      neurosciencedata-managementneuroblueprint
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•26•44•10•Updated Sep 12, 2025Sep 12, 2025

    • neuroinformatics-unit.github.io

      Public
      Home website of the Neuroinformatics Unit
      BSD 3-Clause "New" or "Revised" License
      •4•12•7•2•Updated Sep 12, 2025Sep 12, 2025

    • zebras-stitching

      Public
      Exploring how to stitch drone imagery and animal trajectories
      Python
      •3•2•1•0•Updated Sep 12, 2025Sep 12, 2025

    • ethology

      Public
      Mix-and-match computer vision tools for your animal behaviour analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•18•25•10•Updated Sep 11, 2025Sep 11, 2025

    • scripts

      Public
      Small but useful scripts to share
      Python
      •0•7•0•1•Updated Sep 11, 2025Sep 11, 2025

    • translocator-models

      Public
      Evaluate the model for the translocator project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Sep 11, 2025Sep 11, 2025

    • derotation

      Public
      Derotate images acquired via multiphoton calcium imaging
      neurosciencecalcium-imagingneuroscience-methods
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•7•4•0•Updated Sep 11, 2025Sep 11, 2025

    • .github

      Public
      MIT License
      •0•6•0•0•Updated Sep 11, 2025Sep 11, 2025

    • actions

      Public
      Re-usable GitHub Action scripts
      MIT License
      •5•12•7•1•Updated Sep 11, 2025Sep 11, 2025

    • spikewrap

      Public
      A package to manage electrophysiology analysis.
      electrophysiologyneuropixelsextracellular-electrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•23•21•5•Updated Sep 8, 2025Sep 8, 2025

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•32•11•0•Updated Sep 8, 2025Sep 8, 2025

    • slurmio

      Public
      Python tools to read SLURM job parameters.
      Python
      •
      MIT License
      •1•8•0•0•Updated Sep 5, 2025Sep 5, 2025

    • probe-anatomy-alignment

      Public
      A project for prototyping extracellular electrophysiology probe and anatomy alignment. Eventually this should be subsumed into spikeinterface / brainglobe.
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 2, 2025Sep 2, 2025

    • movement

      Public
      A Python toolbox for analysing animal body movements across space and time
      behaviorkinematicsneurosciencebehaviouranimalmotion-trackingethology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •70•195•111•34•Updated Sep 2, 2025Sep 2, 2025

    • swc-slack

      Public
      Tools to interface with slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•7•0•0•Updated Sep 2, 2025Sep 2, 2025

    • fancylog

      Public
      Fancier logging with python.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•14•11•2•Updated Sep 2, 2025Sep 2, 2025

    • qt-niu

      Public
      Reusable Qt elements
      Python
      •
      MIT License
      •0•3•0•0•Updated Sep 2, 2025Sep 2, 2025

    • course-animals-in-motion

      Public
      A handbook about open-source tools for tracking animals in videos and quantifying behaviour.
      pythonbehaviortrackingmotionhandbookanimalsmovementquarto
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•3•3•0•Updated Aug 18, 2025Aug 18, 2025

    • slides-osw25-intro

      Public archive
      Shared introductory slides to use at the start of each day at OSW
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • pretty-bugs

      Public
      Collections of cool screenshots of students' work
      Creative Commons Attribution 4.0 International
      •13•0•0•2•Updated Aug 14, 2025Aug 14, 2025

    • slides-big-imaging-data-osw25

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • NeuroBlueprint

      Public
      Lightweight data specification for systems neuroscience, inspired by BIDS.
      Creative Commons Attribution 4.0 International
      •4•19•12•1•Updated Aug 8, 2025Aug 8, 2025

    • smart-kages-movement

      Public
      Using the movement package to analysing mouse home cage monitoring data acquired in Smart-Kages and tracked with DeepLabCut.
      trackingmousebehaviourmovement
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•1•0•Updated Aug 6, 2025Aug 6, 2025

    • osw25-hackday

      Public archive
      A place to create and discuss ideas for the 2025 Open Software Week hackathon
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • sphinx-deployment-test

      Public
      A "toy" website repository for testing our sphinx build and deploy GitHub actions
      Creative Commons Attribution 4.0 International
      •1•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • photon-mosaic

      Public
      Automated and reproducible analysis of multiphoton calcium imaging datasets
      neuroscienceneuroscience-methods
      Python
      •
      GNU General Public License v3.0
      •1•7•14•0•Updated Jul 24, 2025Jul 24, 2025

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •259•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • artifact.ci

      Public
      🗿 view github artifacts in your browser
      TypeScript
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • HowTo

      Public
      NIU website on common software problems and their troubleshooting
      Creative Commons Attribution 4.0 International
      •1•10•11•0•Updated Jul 22, 2025Jul 22, 2025

    • software-skills

      Public
      Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
      Creative Commons Attribution 4.0 International
      •0•7•0•0•Updated Jun 3, 2025Jun 3, 2025