Repositories list

• py-graph-match

  Public
  Graph Match

  Python

  •

  GNU Lesser General Public License v3.0

  •5•0•2•0•Updated Nov 25, 2025Nov 25, 2025

• py-ard

  Public
  HLA ARD Reduction in Python

  hla

  Python

  •

  GNU Lesser General Public License v3.0

  •14•19•21•0•Updated Nov 13, 2025Nov 13, 2025

• homebrew-tap

  Public
  Tap to install nmdp-bioinformatics software for Homebrew

  Ruby

  •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

• plstring-code-jekyll

  Public
  website plstring.org

  Shell

  •

  Apache License 2.0

  •2•0•0•0•Updated Nov 2, 2025Nov 2, 2025

• phycus

  Public
  Haplotype Frequency Curation

  Makefile

  •2•0•0•0•Updated Oct 22, 2025Oct 22, 2025

• hfx

  Public
  HFX (Haplotype Frequecy eXchange) Format Specification

  Apache License 2.0

  •4•0•1•1•Updated Oct 15, 2025Oct 15, 2025

• hfx-tools

  Public
  Tools for working with HFX data

  Apache License 2.0

  •1•0•0•0•Updated Oct 13, 2025Oct 13, 2025

• phycus-legacy

  Public archive
  Service used for curation of Haplotype Frequency

  Java

  •

  GNU Lesser General Public License v3.0

  •24•7•20•0•Updated Oct 13, 2025Oct 13, 2025

• nmdp-bioinformatics.github.io

  Public
  Organization Website for NMDP Bioinformatics

  HTML

  •2•1•0•0•Updated Oct 7, 2025Oct 7, 2025

• nmdp-python-project-template

  Public template
  Python project template for NMDP Bioinformatics

  Python

  •

  GNU Lesser General Public License v3.0

  •2•2•0•0•Updated Sep 11, 2025Sep 11, 2025

• dash

  Public
  Data Standards Hackathon for NGS based typing.

  HTML

  •

  GNU Lesser General Public License v3.0

  •12•14•15•0•Updated Sep 11, 2025Sep 11, 2025

• py-graph-imputation

  Public
  Graph Imputation

  Python

  •

  GNU Lesser General Public License v3.0

  •8•2•5•0•Updated Sep 11, 2025Sep 11, 2025

• asom

  Public
  ASOM: Age/Sex Optimal Matching

  R

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Jul 21, 2025Jul 21, 2025

• genotype-list

  Public
  Genotype List service, client library, and command line tools.

  Java

  •

  GNU Lesser General Public License v3.0

  •8•3•0•2•Updated Jul 12, 2025Jul 12, 2025

• nmdp-bioinformatics-python-script-template

  Public template
  Project Template for Python Scripts

  Makefile

  •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• service-epitope

  Public
  T-cell epitope group matching service for HLA-DPB1 locus

  Java

  •

  GNU Lesser General Public License v3.0

  •6•3•3•1•Updated Jun 12, 2025Jun 12, 2025

• gfe-db

  Public
  Graph database representing IPD-IMGT/HLA sequence data as GFE

  gfe

  Makefile

  •

  GNU General Public License v3.0

  •15•11•18•2•Updated Jun 5, 2025Jun 5, 2025

• act-service

  Public archive
  Allele Calling Tool (ACT)

  hlagfe

  Python

  •

  GNU General Public License v3.0

  •5•5•0•0•Updated Jun 5, 2025Jun 5, 2025

• service-population

  Public archive
  Service to register and lookup population

  Java

  •

  GNU Lesser General Public License v3.0

  •1•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• hml-fhir-app

  Public archive
  HML to FHIR Conversion Application

  Java

  •

  GNU Lesser General Public License v3.0

  •9•4•0•0•Updated Jun 5, 2025Jun 5, 2025

• miring-validator

  Public
  Semantic Validator for MIRING-compliant HML

  Java

  •

  GNU Lesser General Public License v3.0

  •4•2•7•0•Updated May 16, 2025May 16, 2025

• hml

  Public
  Histoimmunogenetics Markup Language (HML).

  GNU Lesser General Public License v3.0

  •7•4•13•0•Updated May 13, 2025May 13, 2025

• dpb1-prediction

  Public
  DPB1 and TCE Prediction

  Python

  •2•0•3•1•Updated Mar 22, 2025Mar 22, 2025

• ambiguous-genotypes

  Public
  sample data with ambiguous genotypes and the corresponding unambiguous genotype

  Apache License 2.0

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• wmda_mv4

  Public
  WMDA matching validation code

  Perl

  •

  Apache License 2.0

  •0•0•1•0•Updated Sep 25, 2024Sep 25, 2024

• hapi-fhir

  Public
  HAPI FHIR - Java API for HL7 FHIR Clients and Servers

  Java

  •

  Apache License 2.0

  •1.4k•2•0•7•Updated Sep 11, 2024Sep 11, 2024

• tarr2fhir

  Public archive
  Convert tarr2fhir Sync4Genes - Versiti and GenDx

  Java

  •

  Apache License 2.0

  •1•1•0•9•Updated Jul 23, 2024Jul 23, 2024

• imgt2aa

  Public
  extract aligned amino acid sequences from IMGT/HLA

  Perl

  •

  GNU Lesser General Public License v3.0

  •3•4•1•0•Updated Jun 27, 2024Jun 27, 2024

• imgt_biosqldb

  Public
  The IMGT/HLA sequence data persisted in a BioSQL database

  mysqlpythondocker+ 4bioinformaticshlahla-databasebiosql

  Python

  •

  GNU General Public License v3.0

  •3•3•0•0•Updated Mar 11, 2024Mar 11, 2024

• gfe-docker-compose-app

  Public
  GFE service and GFE Database Docker Compose

  0•2•0•0•Updated Mar 11, 2024Mar 11, 2024