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    15 repositories

    • openspim.github.io

      Public
      OpenSPIM web site
      CSS
      •5•3•0•0•Updated Aug 8, 2025Aug 8, 2025

    • micro-OpenSPIM

      Public
      µOpenSPIM for Micro-Manager version 2
      Java
      •0•8•0•0•Updated Nov 28, 2024Nov 28, 2024

    • openspim-app

      Public
      ImageJ2 adapter for OpenSPIM
      Java
      •0•0•2•0•Updated Nov 8, 2021Nov 8, 2021

    • pipermail

      Public
      Archived content from retired OpenSPIM mailing list
      HTML
      •0•0•0•0•Updated Aug 17, 2020Aug 17, 2020

    • openspim-parts

      Public
      3D printable parts for OpenSPIM setups
      4•1•0•0•Updated Nov 22, 2016Nov 22, 2016

    • micromanager

      Public
      Our fork of micromanager
      C++
      •7•6•1•0•Updated May 12, 2016May 12, 2016

    • SPIMAcquisition

      Public
      The Micro-Manager plugin to acquire images with an OpenSPIM setup
      Java
      •8•1•11•1•Updated Apr 25, 2016Apr 25, 2016

    • imagej-ui-swing

      Public
      ImageJ UI for Java Swing.
      Java
      •
      Other
      •20•0•0•0•Updated Jul 9, 2014Jul 9, 2014

    • fusion-pipeline

      Public
      A Fiji plugin designed to simplify the processing of OpenSPIM (or, more generally, any SPIM) data.
      Java
      •0•0•0•0•Updated Jun 5, 2014Jun 5, 2014

    • 3rdpartypublic

      Public archive
      Obsolete: due to file size restrictions, this mirror cannot be updated any longer. The mirror now lives at http://fiji.sc/mmanager-3rdparty.git
      C++
      •0•0•0•0•Updated Apr 11, 2014Apr 11, 2014

    • mediawiki-extensions-OggHandler

      Public archive
      OBSOLETE fork of MediaWiki OggHandler extension, once used by openspim.org
      PHP
      •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

    • OME-Tiff-Test

      Public
      A test to demonstrate issues.
      Java
      •0•0•0•0•Updated Feb 7, 2013Feb 7, 2013

    • Cavendish

      Public
      Cavendish MediaWiki Skin
      PHP
      •18•0•0•0•Updated Feb 5, 2013Feb 5, 2013

    • bioformats

      Public
      Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularl…
      Java
      •
      GNU General Public License v2.0
      •253•0•0•0•Updated Jan 31, 2013Jan 31, 2013

    • msysgit

      Public
      The msysGit repository. Please post all patches to the msysGit mailing list.
      C
      •588•0•0•0•Updated Jan 17, 2013Jan 17, 2013