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@poseidon-framework Poseidon Framework

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    21 repositories

    • poseidon-hs

      Public
      A toolset to work with modular genotype databases in the Poseidon format
      haskellresearch-datagenotype-dataancient-dna
      Haskell
      •
      MIT License
      •4•11•28•4•Updated Feb 13, 2026Feb 13, 2026

    • poseidon-analysis-hs

      Public
      A tool to analyse genotype data (optionally in the poseidon data format)
      Haskell
      •
      MIT License
      •0•4•9•3•Updated Feb 13, 2026Feb 13, 2026

    • minotaur-archive

      Public
      The Poseidon Minotaur Archive (PMA). :warning: Download from here: https://server.poseidon-adna.org/explorer/minotaur-archive :no_entry_sign: NOT through the Gi…
      data-repositoryresearch-dataancient-dna
      1•2•0•5•Updated Feb 10, 2026Feb 10, 2026

    • minotaur-recipes

      Public
      Package recipes for processing through the Minotaur workflow
      Shell
      •
      GNU General Public License v3.0
      •16•2•66•40•Updated Jan 19, 2026Jan 19, 2026

    • poseidon-schema

      Public
      An archaeogenetic genotype data organisation file format
      standardizationdata-formatadnaancient-dna
      2•2•8•2•Updated Jan 16, 2026Jan 16, 2026

    • poseidon-blog

      Public
      A quarto-blog page for Poseidon.
      JavaScript
      •0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • community-archive

      Public
      The Poseidon Community Archive (PCA). :warning: Download from here: https://server.poseidon-adna.org/explorer/community-archive :no_entry_sign: NOT through the …
      data-repositoryresearch-dataancient-dna
      30•13•18•1•Updated Jan 16, 2026Jan 16, 2026

    • aadr-archive

      Public
      The Poseidon AADR Archive (PAA). :warning: Download from here: https://server.poseidon-adna.org/explorer/aadr-archive :no_entry_sign: NOT through the GitHub web…
      data-repositoryresearch-dataancient-dna
      0•2•0•0•Updated Jan 7, 2026Jan 7, 2026

    • paper-directory

      Public
      Python
      •0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • aadr2poseidon

      Public
      TeX
      •
      MIT License
      •1•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • poseidon-framework.github.io

      Public
      Main landing page for getting information about the Poseidon project
      documentationresearch-datagenotype-dataancient-dna
      TeX
      •1•6•1•0•Updated Dec 8, 2025Dec 8, 2025

    • minotaur-institutional-configs

      Public
      A collection of nextflow configurations files for different computational clusters.
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • scripts

      Public
      R
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • poseidon-eager

      Public
      The under-the-hood machinery of the Minotaur workflow
      Shell
      •4•0•2•0•Updated Sep 4, 2025Sep 4, 2025

    • qjanno

      Public
      A CLI tool to run SQL queries on Poseidon .janno files
      haskellsqliteresearch-dataancient-dna
      Haskell
      •
      MIT License
      •0•2•0•1•Updated Feb 12, 2025Feb 12, 2025

    • janno

      Public
      R Package - Handling .janno files in R
      rresearch-dataadnaancient-dna
      R
      •
      MIT License
      •0•2•4•0•Updated Mar 13, 2024Mar 13, 2024

    • poseidon-http-server

      Public archive
      A program to serve Poseidon package repositories via HTTP
      Haskell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 7, 2021Feb 7, 2021

    • poseidonTestData

      Public archive
      TeX
      •0•0•0•0•Updated Dec 28, 2020Dec 28, 2020

    • poseidon2.package.manager

      Public archive
      Internal data management helper for the MPI-SHH DAG
      Shell
      •0•0•1•0•Updated Jul 10, 2020Jul 10, 2020

    • poseidon3-tools

      Public archive
      Python API and command line tool for working with Poseidon databases
      Python
      •
      MIT License
      •0•0•2•0•Updated May 26, 2020May 26, 2020

    • poseidon3-schema

      Public archive
      Schema of the Poseidon data format
      Shell
      •
      MIT License
      •1•0•4•0•Updated May 26, 2020May 26, 2020