Repositories list

• sheffield-bioinformatics-core.github.io

  Public
  Website for The University of Sheffield Bioinformatics Core

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •2.5k•6•0•3•Updated Jul 31, 2025Jul 31, 2025

• ngs_intro_workshop

  Public
  Introductory workshop on analysis of NGS data in Galaxy and other online tools

  HTML

  •

  Other

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• spatial_transcriptomics_tutorial

  Public
  A bare bones tutorial on how to analyse spatial transcriptomics data from raw sequencing reads to visualising spatially distinct features

  bioinformaticssequencingbioinformatics-analysis+ 3single-cell-rna-seqspatial-transcriptomicstutorial

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•7•0•0•Updated Jul 2, 2025Jul 2, 2025

• rnaseq-introduction-online

  Public
  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• scrnaseq_course

  Public
  Our course on the analysis of Single-cell RNA-Seq

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• stats-in-r

  Public
  Statistical Analysis of Biological Data

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •3•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• rnaseq-beginners

  Public
  Half-day course on analysing RNA-seq data from counts

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• wr_bbsrc_dtp_analytics2_2024

  Public
  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• Cytoscape_Course

  Public
  This is a basic cytoscape course intended for beginners to get training with biological network analysis.

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •3•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• command-line-bio

  Public
  New workshop on using command-line for Bioinformatics

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• 2024_07_17_Cardinal_Workflows

  Public
  Some example workflows of using Cardinal package for Mass Spec imaging

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• 2024_07_19_spatialGE_examples

  Public
  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• data_science_bootcamp

  Public
  R visualisation tutorial for Data Science Bootcamp

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• misc_scripts

  Public
  Repository for miscellaneous scripts created by SBC

  Shell

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• r-online

  Public
  Online Training Materials for R

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •2•1•0•0•Updated Jun 28, 2025Jun 28, 2025

• rnaseq-r-online

  Public
  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• r4biol

  Public
  R for Biological Data Analysis

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•0•3•0•Updated Jun 24, 2025Jun 24, 2025

• wr_bbsrc_dtp_analytics2_2025

  Public
  2025 version of White Rose Command Line course

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• bacass

  Public
  Simple bacterial assembly and annotation pipeline

  Nextflow

  •

  MIT License

  •62•0•0•0•Updated May 31, 2024May 31, 2024

• wf-template

  Public
  Nextflow workflow template repository

  Python

  •

  Other

  •35•0•0•0•Updated May 24, 2024May 24, 2024

• sbc-invoicing

  Public
  R-Shiny App to build a .pdf Invoice, check the parent package

  R

  •4•0•0•0•Updated Apr 13, 2024Apr 13, 2024

• NanoCLUST

  Public
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

  Nextflow

  •

  MIT License

  •50•1•0•0•Updated Jan 5, 2024Jan 5, 2024

• nbug11

  Public
  Repo for all materials for nbug11

  0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• nf-core-user-docs

  Public
  Documentation and user guides relating to deployment of nf-core pipelines on Stanage

  Shell

  •

  MIT License

  •2•1•1•0•Updated Oct 12, 2023Oct 12, 2023

• wr_bbsrc_dtp_analytics2_2023

  Public
  Repository for Analytics 2 teaching for White Rose BBSRC DTP (2023 edition)

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 25, 2023Jun 25, 2023

• BMS31004_2023

  Public
  HTML

  •0•0•0•0•Updated Mar 27, 2023Mar 27, 2023

• aplanat_UoS

  Public
  Simplifies bokeh plotting, particularly tailored for JupyterLab

  Python

  •

  Other

  •1•0•0•0•Updated Feb 20, 2023Feb 20, 2023

• 2023_01_Dimen_DTP_training

  Public
  Data Analysis Training for DiMeN DTP Students

  0•0•0•0•Updated Jan 24, 2023Jan 24, 2023

• bms31004_2022

  Public
  BMS31004 - Bioinformatics for Biomedical Science

  HTML

  •0•0•0•0•Updated Jan 9, 2023Jan 9, 2023

• white_rose_dtp_analytics2

  Public
  Materials for Analytics 2 module for the White Rose DTP

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022