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    71 repositories

    • percolator

      Public
      Semi-supervised learning for peptide identification from shotgun proteomics datasets
      C++
      •
      Other
      •45•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • cb2030

      Public
      Course material for CB2030
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •37•13•1•14•Updated Mar 13, 2026Mar 13, 2026

    • bayesDREAM

      Public
      Python
      •1•0•0•0•Updated Mar 6, 2026Mar 6, 2026

    • dsbook

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •9•2•1•2•Updated Jan 14, 2026Jan 14, 2026

    • forms-ddls

      Public
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • amoris_shap

      Public
      Python
      •0•0•0•0•Updated Dec 14, 2025Dec 14, 2025

    • statisticalbiotechnology.github.io

      Public
      ✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
      HTML
      •
      MIT License
      •17k•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • triqler

      Public
      The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
      Python
      •
      Apache License 2.0
      •11•26•3•1•Updated Oct 2, 2025Oct 2, 2025

    • fairddls

      Public
      CSS
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • bibook

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •27•1•3•0•Updated Sep 5, 2025Sep 5, 2025

    • maracluster

      Public
      Matthew The's implementation of MaRaCluster
      C++
      •
      Apache License 2.0
      •4•11•2•0•Updated Jun 26, 2025Jun 26, 2025

    • smooth_q_to_pep

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Jun 4, 2025Jun 4, 2025

    • marp-ddls

      Public
      This directory implements the DDLS graphical profile as a marp theme
      CSS
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • pairwise

      Public
      Code for describing the pairwise attention architecture
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated May 5, 2025May 5, 2025

    • twinspace

      Public
      A clone of MSCI for the purpose of finding out the relation between search space.
      Python
      •2•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • mgf-rust-parser

      Public
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • ContraNovo

      Public
      Experimenting with ContraNovo representations on MS2 data
      Python
      •3•0•0•0•Updated May 23, 2024May 23, 2024

    • vrbiostat

      Public
      An analysis of success rates at VR-NT 2008-2016
      Jupyter Notebook
      •1•0•0•0•Updated Apr 18, 2024Apr 18, 2024

    • diffacto

      Public
      Python
      •
      Other
      •8•13•8•0•Updated Mar 19, 2024Mar 19, 2024

    • mipath

      Public
      Source code for MIPath, a pathway analysis method.
      Jupyter Notebook
      •
      Apache License 2.0
      •1•5•0•0•Updated Nov 14, 2023Nov 14, 2023

    • mad_decoy

      Public
      Some decoy experiments to help Yasset
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • featureimportance

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 17, 2023Oct 17, 2023

    • centos_runner

      Public
      Runner for percolator builds under centos
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • wall

      Public
      Patrik's repository for metabric analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•1•Updated Jul 6, 2023Jul 6, 2023

    • decoy-decoy

      Public
      Test of differences of decoy databases
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • dia_sum

      Public
      Patrick's repository
      Jupyter Notebook
      •1•2•0•0•Updated Apr 19, 2023Apr 19, 2023

    • lilliput

      Public
      Loingitudinal pathway analysis with PCA
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 15, 2023Jan 15, 2023

    • cryohmmer

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 5, 2022Oct 5, 2022

    • prosittransformer

      Public
      Markus' project on predictions of ms2-spectra
      Jupyter Notebook
      •1•4•2•1•Updated Sep 5, 2022Sep 5, 2022

    • quandenser

      Public
      QUANtification by Distillation for ENhanced Signals with Error Regulation
      C++
      •
      Apache License 2.0
      •2•10•6•0•Updated Aug 20, 2022Aug 20, 2022