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@terraref A Reference Phenotyping Platform for Crop Breeding and Improvement

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    35 repositories

    • computing-pipeline

      Public
      Pipeline to Extract Plant Phenotypes from Reference Data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•25•100•2•Updated Feb 24, 2025Feb 24, 2025

    • terrautils

      Public
      Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•4•0•5•Updated Oct 3, 2023Oct 3, 2023

    • stereo_rgb

      Public
      the new science functions in Stereo-RGB extractor
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•2•Updated Jul 6, 2023Jul 6, 2023

    • laser3d

      Public
      ply file to plot level las file science function package
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•1•2•Updated Jul 6, 2023Jul 6, 2023

    • extractors-metadata

      Public
      Scripts and code for generally applicable metadata extraction, e.g. extracting geospatial footprints from multiple sensors' metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•1•Updated Dec 26, 2022Dec 26, 2022

    • search-frontend

      Public
      frontend for advanced search interface
      Vue
      •0•1•0•25•Updated Dec 11, 2022Dec 11, 2022

    • service-products

      Public
      A REST server that provide helps locate file products.
      Python
      •1•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • workbench-catalog

      Public
      Catalog of services available via TERRA-REF Analysis Workbench
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Nov 16, 2022Nov 16, 2022

    • extractors-environmental

      Public
      Scripts and code relevant to the CO2 and environmental logger sensors, as well as Maricopa lightning/weather/irrigation data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•1•Updated Jun 21, 2022Jun 21, 2022

    • brapi

      Public
      Breeder's API implementation for TERRA-REF
      brapiterrrefbety-database
      brapiterrrefbety-databasebetydb
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•8•1•Updated Jun 20, 2022Jun 20, 2022

    • icasa

      Public
      ICASA vocabulary
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•0•0•Updated Jun 7, 2022Jun 7, 2022

    • extractors-3dscanner

      Public
      Scripts and code relevant to the 3D height scanner.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Apr 13, 2022Apr 13, 2022

    • traitvis-webapp

      Public
      Shiny application for visualizing trait data
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•10•1•Updated Apr 6, 2022Apr 6, 2022

    • data-publication

      Public
      Just the content going to Dryad; see also terraref/data-paper for data descriptor
      TeX
      •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • tutorials

      Public
      Learn to use TERRA REF data and software
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •11•8•20•2•Updated Sep 2, 2021Sep 2, 2021

    • extractors-hyperspectral

      Public
      Scripts and code relevant to the SWIR and VNIR cameras.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•5•0•0•Updated Jun 2, 2021Jun 2, 2021

    • documentation

      Public
      TERRAref documentation
      CSS
      •7•6•13•0•Updated Feb 15, 2021Feb 15, 2021

    • reference-data

      Public
      Coordination of Data Products and Standards for TERRA reference data
      agriculturesensor-dataphenomics
      agriculturesensor-dataphenomics
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•64•0•Updated Feb 1, 2021Feb 1, 2021

    • drone-pipeline

      Public archive
      Generalizing the TERRA REF pipelines for processing data from UAV's
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•0•0•Updated Nov 18, 2020Nov 18, 2020

    • extractors-multispectral

      Public
      Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •6•4•0•4•Updated Oct 2, 2020Oct 2, 2020

    • extractors-stereo-rgb

      Public
      Scripts and code relevant to the 8MP RGB stereo 3D cameras.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•1•Updated Jul 7, 2020Jul 7, 2020

    • data-paper

      Public
      2•0•3•0•Updated Jun 30, 2020Jun 30, 2020

    • quality-metrics

      Public
      Repo for general QA/QC tools and extractors.
      Python
      •1•0•0•0•Updated May 17, 2020May 17, 2020

    • traits

      Public
      Species traits data
      R
      •
      Other
      •13•2•0•1•Updated Feb 10, 2020Feb 10, 2020

    • sensor-metadata

      Public
      Device and sensor fixed metadata
      3•1•0•1•Updated Feb 4, 2020Feb 4, 2020

    • terraref.github.io

      Public archive
      [Deprecated] Original website content for the TERRA-REF reference phenotyping platform
      JavaScript
      •
      Other
      •0•0•2•2•Updated Dec 15, 2019Dec 15, 2019

    • search-api

      Public
      flask api for advanced search interface
      Python
      •0•1•2•0•Updated Sep 10, 2019Sep 10, 2019

    • toolserver-dockerfiles

      Public
      TERRA-REF Dockerfiles for Clowder toolserver
      Dockerfile
      •2•0•0•1•Updated Aug 9, 2019Aug 9, 2019

    • kubeadm-terraform

      Public
      Terraform plan that uses data-8's kubeadm bootstrap for Kubernetes on Openstack
      HCL
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated May 7, 2019May 7, 2019

    • workflow-pilot

      Public
      Github repo for ECSS workflow pilot project
      Python
      •1•2•0•0•Updated Feb 13, 2019Feb 13, 2019