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    22 repositories

    • vcell

      Public
      Virtual Cell Framework
      simulationinstall4jvcell-clientsvcell-server
      Java
      •
      Other
      •29•112•213•30•Updated Feb 13, 2026Feb 13, 2026

    • VCell-AI

      Public
      An AI-powered platform for discovering, analyzing, and exploring biomodels from the VCell database. Built as part of Google Summer of Code (GSoC25), this projec…
      pythondockertypescriptnextjsauth0biomodelsfastapivcellqdrantllms
      TypeScript
      •
      MIT License
      •2•5•14•0•Updated Feb 10, 2026Feb 10, 2026

    • CompCellBio

      Public
      HTML
      •1•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • vcell-ode

      Public
      The ODE focused solvers VCell utilizes in it's main applications
      C
      •0•1•4•0•Updated Dec 18, 2025Dec 18, 2025

    • pyvcell

      Public
      Python
      •
      MIT License
      •0•1•2•2•Updated Dec 15, 2025Dec 15, 2025

    • modelbricks-webapp

      Public
      webapp for exploring public models
      Handlebars
      •8•0•0•1•Updated Oct 16, 2025Oct 16, 2025

    • openapi-generator

      Public
      OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec …
      Java
      •
      Apache License 2.0
      •7.4k•0•0•0•Updated May 20, 2025May 20, 2025

    • vcell-fiji

      Public
      A tool that loads VCell simulation results into ImageJ and performs statistical analysis.
      Java
      •
      MIT License
      •1•2•8•0•Updated Apr 23, 2025Apr 23, 2025

    • vcell-fvsolver

      Public
      VCell Finite Volume PDE solver
      C++
      •
      MIT License
      •0•1•1•3•Updated Apr 17, 2025Apr 17, 2025

    • libvcell

      Public
      Java
      •
      MIT License
      •0•1•0•0•Updated Apr 10, 2025Apr 10, 2025

    • vcell-jsbml

      Public
      JSBML Fork For VCell
      Java
      •
      GNU Lesser General Public License v2.1
      •27•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • vcdb

      Public
      Shell
      •
      MIT License
      •0•3•12•0•Updated Jan 30, 2025Jan 30, 2025

    • vcell-solvers

      Public
      Virtual Cell solvers
      virtual-cell-solvers
      C
      •6•6•6•0•Updated Nov 13, 2024Nov 13, 2024

    • vcell-api-client

      Public
      Python client for VCell REST API
      Python
      •
      MIT License
      •0•0•0•0•Updated May 30, 2024May 30, 2024

    • vcell-bioformats

      Public archive
      implementation of ImageDatasetService thrift interface (optionally used by VCell if separately installed)
      Java
      •0•2•0•0•Updated May 6, 2024May 6, 2024

    • usermaterials

      Public
      MIT License
      •0•0•3•0•Updated Sep 13, 2022Sep 13, 2022

    • vcellMichael

      Public archive
      Virtual Cell Framework
      Java
      •
      Other
      •29•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • vcell_cli_utils

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 24, 2021Jun 24, 2021

    • test_suite

      Public archive
      Python
      •
      MIT License
      •0•0•5•0•Updated Mar 15, 2021Mar 15, 2021

    • Biosimulators_utils

      Public archive
      Utilities for building standardized command-line interfaces for biosimulation software packages
      Python
      •
      MIT License
      •6•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • GoogleSummerOfCode

      Public
      Main documentation site for NRNB GSoC project ideas and resources
      58•0•1•0•Updated Feb 5, 2020Feb 5, 2020

    • vcell-imagej-fret-app

      Public archive
      Virtual Cell integration for ImageJ ** MOVED: https://github.com/virtualcell/vcell
      Java
      •0•2•0•0•Updated Oct 20, 2017Oct 20, 2017