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Fix bug in Series.describe where the median is included any time the percentiles argument is not None #47402

Fix bug in Series.describe where the median is included any time the percentiles argument is not None

Fix bug in Series.describe where the median is included any time the percentiles argument is not None #47402

Workflow file for this run

# Workflow to build wheels for upload to PyPI.
# Inspired by numpy's cibuildwheel config https://github.com/numpy/numpy/blob/main/.github/workflows/wheels.yml
#
# In an attempt to save CI resources, wheel builds do
# not run on each push but only weekly and for releases.
# Wheel builds can be triggered from the Actions page
# (if you have the permissions) on a commit to main.
#
# Alternatively, you can add labels to the pull request in order to trigger wheel
# builds.
# The label(s) that trigger builds are:
# - Build
name: Wheel builder
on:
schedule:
# 3:27 UTC every day
- cron: "27 3 * * *"
push:
pull_request:
types: [labeled, opened, synchronize, reopened]
paths-ignore:
- "doc/**"
- "web/**"
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
permissions:
contents: read
jobs:
build_sdist:
name: Build sdist
if: >-
(github.event_name == 'schedule') ||
github.event_name == 'workflow_dispatch' ||
(github.event_name == 'pull_request' &&
contains(github.event.pull_request.labels.*.name, 'Build')) ||
(github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') && ( ! endsWith(github.ref, 'dev0')))
runs-on: ubuntu-22.04
env:
IS_PUSH: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') }}
IS_SCHEDULE_DISPATCH: ${{ github.event_name == 'schedule' || github.event_name == 'workflow_dispatch' }}
outputs:
sdist_file: ${{ steps.save-path.outputs.sdist_name }}
steps:
- name: Checkout pandas
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Build sdist
run: |
python -m pip install build
python -m build --sdist
- uses: actions/upload-artifact@v4
with:
name: sdist
path: ./dist/*
- name: Sanity check sdist files
run: |
ls ./dist
- name: Output sdist name
id: save-path
shell: bash -el {0}
run: echo "sdist_name=$(ls ./dist)" >> "$GITHUB_OUTPUT"
build_wheels:
needs: build_sdist
name: Build wheel for ${{ matrix.python[0] }}-${{ matrix.buildplat[1] }}
if: >-
(github.event_name == 'schedule') ||
github.event_name == 'workflow_dispatch' ||
(github.event_name == 'pull_request' &&
contains(github.event.pull_request.labels.*.name, 'Build')) ||
(github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') && ( ! endsWith(github.ref, 'dev0')))
runs-on: ${{ matrix.buildplat[0] }}
strategy:
fail-fast: false
matrix:
# GitHub Actions doesn't support pairing matrix values together, let's improvise
# https://github.com/github/feedback/discussions/7835#discussioncomment-1769026
buildplat:
- [ubuntu-22.04, manylinux_x86_64]
- [ubuntu-22.04, musllinux_x86_64]
- [ubuntu-24.04-arm, manylinux_aarch64]
- [macos-13, macosx_x86_64]
# Note: M1 images on Github Actions start from macOS 14
- [macos-14, macosx_arm64]
- [windows-2022, win_amd64]
# TODO: support PyPy?
python: [["cp310", "3.10"], ["cp311", "3.11"], ["cp312", "3.12"], ["cp313", "3.13"], ["cp313t", "3.13"]]
include:
# TODO: Remove this plus installing build deps in cibw_before_build.sh
# after pandas can be built with a released NumPy/Cython
- python: ["cp313t", "3.13"]
cibw_build_frontend: 'pip; args: --no-build-isolation'
# Build Pyodide wheels and upload them to Anaconda.org
# NOTE: this job is similar to the one in unit-tests.yml except for the fact
# that it uses cibuildwheel instead of a standard Pyodide xbuildenv setup.
- buildplat: [ubuntu-22.04, pyodide_wasm32]
python: ["cp312", "3.12"]
cibw_build_frontend: 'build'
env:
IS_PUSH: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') }}
IS_SCHEDULE_DISPATCH: ${{ github.event_name == 'schedule' || github.event_name == 'workflow_dispatch' }}
steps:
- name: Checkout pandas
uses: actions/checkout@v4
with:
fetch-depth: 0
# TODO: Build wheels from sdist again
# There's some sort of weird race condition?
# within Github that makes the sdist be missing files
# We need to build wheels from the sdist since the sdist
# removes unnecessary files from the release
- name: Download sdist (not macOS)
#if: ${{ matrix.buildplat[1] != 'macosx_*' }}
uses: actions/download-artifact@v4
with:
name: sdist
path: ./dist
- name: Output sdist name (macOS)
id: save-path
shell: bash -el {0}
run: echo "sdist_name=$(ls ./dist)" >> "$GITHUB_ENV"
# Python version used to build sdist doesn't matter
# wheel will be built from sdist with the correct version
- name: Unzip sdist (macOS)
if: ${{ startsWith(matrix.buildplat[1], 'macosx') }}
run: |
tar -xzf ./dist/${{ env.sdist_name }} -C ./dist
- name: Output sdist name (macOS)
id: save-path2
shell: bash -el {0}
run: echo "sdist_name=$(cd ./dist && ls -d */)" >> "$GITHUB_ENV"
- name: Build wheels
uses: pypa/[email protected]
with:
package-dir: ./dist/${{ startsWith(matrix.buildplat[1], 'macosx') && env.sdist_name || needs.build_sdist.outputs.sdist_file }}
env:
CIBW_BUILD: ${{ matrix.python[0] }}-${{ matrix.buildplat[1] }}
CIBW_BUILD_FRONTEND: ${{ matrix.cibw_build_frontend || 'pip' }}
CIBW_PLATFORM: ${{ matrix.buildplat[1] == 'pyodide_wasm32' && 'pyodide' || 'auto' }}
- name: Set up Python
uses: mamba-org/setup-micromamba@v2
with:
environment-name: wheel-env
# Use a fixed Python, since we might have an unreleased Python not
# yet present on conda-forge
create-args: >-
python=3.11
anaconda-client
wheel
cache-downloads: true
cache-environment: true
- name: Validate wheel RECORD
shell: bash -el {0}
run: for whl in $(ls wheelhouse); do wheel unpack wheelhouse/$whl -d /tmp; done
- uses: actions/upload-artifact@v4
with:
name: ${{ matrix.python[0] }}-${{ matrix.buildplat[1] }}
path: ./wheelhouse/*.whl
- name: Upload wheels & sdist
if: ${{ success() && (env.IS_SCHEDULE_DISPATCH == 'true' || env.IS_PUSH == 'true') }}
shell: bash -el {0}
env:
PANDAS_STAGING_UPLOAD_TOKEN: ${{ secrets.PANDAS_STAGING_UPLOAD_TOKEN }}
PANDAS_NIGHTLY_UPLOAD_TOKEN: ${{ secrets.PANDAS_NIGHTLY_UPLOAD_TOKEN }}
# trigger an upload to
# https://anaconda.org/scientific-python-nightly-wheels/pandas
# for cron jobs or "Run workflow" (restricted to main branch).
# Tags will upload to
# https://anaconda.org/multibuild-wheels-staging/pandas
# The tokens were originally generated at anaconda.org
run: |
source ci/upload_wheels.sh
set_upload_vars
upload_wheels