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QIIME2-commands_16S-12-parts-Pachnoda-gut.sh
QIIME2-commands_16S-12-parts-Pachnoda-gut.sh
 
 
QIIME2-commands_16S-sulfate-cellulose-biogas.sh
QIIME2-commands_16S-sulfate-cellulose-biogas.sh
 
 
QIIME2-commands_16S-suppliers.sh
QIIME2-commands_16S-suppliers.sh
 
 
QIIME2-commands_ITS-12-parts-Pachnoda-gut.sh
QIIME2-commands_ITS-12-parts-Pachnoda-gut.sh
 
 
QIIME2-commands_ITS-sulfate-cellulose-biogas.sh
QIIME2-commands_ITS-sulfate-cellulose-biogas.sh
 
 
QIIME2-commands_ITS-suppliers.sh
QIIME2-commands_ITS-suppliers.sh
 
 
R-commands_12-parts.Rmd
R-commands_12-parts.Rmd
 
 
R-commands_functional-analysis-assemblies-MAGs.Rmd
R-commands_functional-analysis-assemblies-MAGs.Rmd
 
 
R-commands_sulfate-cellulose-biogas.Rmd
R-commands_sulfate-cellulose-biogas.Rmd
 
 
R-commands_suppliers-comparison.Rmd
R-commands_suppliers-comparison.Rmd
 
 
README.md
README.md
 
 
commands-metagenomics.sh
commands-metagenomics.sh
 
 
filter-kofamscan-for-best-hits.py
filter-kofamscan-for-best-hits.py
 
 
reciprocal_blast_enzymes.ipynb
reciprocal_blast_enzymes.ipynb
 
 

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Pachnoda-marginata-gut-microbiome

This repository includes all the code used to analyze the data generated for this manuscript: Vidal-Verdú et al. The highly differentiated Pachnoda marginata gut hosts diverse microbiomes with biotechnological applications. 2023

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This repository includes all the code used to analyze the data generated for this manuscript: Vidal-Verdú et al. The highly differentiated Pachnoda marginata gut hosts diverse microbiomes with biotechnological applications. 2023

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  • Shell 5.2%
  • Python 0.6%