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[DRAFT: DO NOT MERGE] Adding electrophys terms #463

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[DRAFT: DO NOT MERGE] Adding electrophys terms #463

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4d8b408
Copied structure of electrophys from ILX
shawntanzk Jan 4, 2022
3a3f0a2
Update pato-edit.obo
shawntanzk Jan 11, 2022
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110 changes: 110 additions & 0 deletions src/ontology/pato-edit.obo
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Expand Up @@ -22249,6 +22249,116 @@ comment: This is distinct from cortical bipolar morphology which has two dendrit
is_a: PATO:0010006 ! cell morphology
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596

[Term]
id: PATO:0070044
name: cellular electrophysiological quality
def: "A cellular quality that exists by virtue of the electrical properties of the cell." [WikipediaVersioned:Electrophysiology&oldid=1059385774]
xref: ilxtr:ElectrophysiologicalPhenotype
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@cmungall cmungall Jan 11, 2022

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ilxtr is not in bioregistry - what is it?

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@shawntanzk shawntanzk Jan 11, 2022

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I've taken it straight from the link @tgbugs gave above (https://github.com/SciCrunch/NIF-Ontology/blob/78f17596d18bd3f1139ea33bbb6b112c97f8162f/ttl/phenotypes.ttl#L303) happy to change it to something else

is_a: PATO:0001396 ! cellular quality

[Term]
id: PATO:0070045
name: spiking phenotype
xref: ilxtr:SpikingPhenotype
is_a: PATO:0070044 ! cellular electrophysiological quality

[Term]
id: PATO:0070046
name: regular spiking non pyramidal phenotype
xref: ilxtr:RegularSpikingNonPyramidalPhenotype
is_a: PATO:0070045 ! spiking phenotype
disjoint_from: PATO:0070059 ! fast spiking phenotype

[Term]
id: PATO:0070047
name: sustained spiking phenotype
xref: ilxtr:PetillaSustainedSpikingPhenotype
is_a: PATO:0070045 ! spiking phenotype

[Term]
id: PATO:0070048
name: initial spiking phenotype
xref: ilxtr:PetillaInitialSpikingPhenotype
is_a: PATO:0070045 ! spiking phenotype
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-7258-9596

[Term]
id: PATO:0070049
name: non-accommodating spiking phenotype
xref: ilxtr:NonAccommodatingSpikingPhenotype
is_a: PATO:0070045 ! spiking phenotype
disjoint_from: PATO:0070050 ! accommodating spiking phenotype

[Term]
id: PATO:0070050
name: accommodating spiking phenotype
xref: ilxtr:AccommodatingSpikingPhenotype
is_a: PATO:0070045 ! spiking phenotype

[Term]
id: PATO:0070051
name: initial delayed spiking phenotype
synonym: "Petilla d" EXACT [PMID:18568015]
xref: ilxtr:PetillaInitialDelayedSpikingPhenotype
is_a: PATO:0070048 ! initial spiking phenotype
disjoint_from: PATO:0070052 ! initial classical spiking phenotype
disjoint_from: PATO:0070053 ! initial burst spiking phenotype

[Term]
id: PATO:0070052
name: initial classical spiking phenotype
synonym: "Petilla c" EXACT [PMID:18568015]
xref: ilxtr:PetillaInitialClassicalSpikingPhenotype
is_a: PATO:0070048 ! initial spiking phenotype
disjoint_from: PATO:0070053 ! initial burst spiking phenotype

[Term]
id: PATO:0070053
name: initial burst spiking phenotype
synonym: "Petilla b" EXACT [PMID:18568015]
xref: ilxtr:PetillaInitialBurstSpikingPhenotype
is_a: PATO:0070048 ! initial spiking phenotype

[Term]
id: PATO:0070055
name: sustained stuttering phenotype
synonym: "Petilla stut" EXACT [PMID:18568015]
xref: ilxtr:PetillaSustainedStutteringPhenotype
is_a: PATO:0070047 ! sustained spiking phenotype
disjoint_from: PATO:0070056 ! sustained non accommodating phenotype
disjoint_from: PATO:0070057 ! sustained irregular phenotype
disjoint_from: PATO:0070058 ! sustained accommodating phenotype

[Term]
id: PATO:0070056
name: sustained non accommodating phenotype
synonym: "Petilla nac" EXACT [PMID:18568015]
xref: ilxtr:PetillaSustainedNonAccommodatingPhenotype
is_a: PATO:0070047 ! sustained spiking phenotype
disjoint_from: PATO:0070057 ! sustained irregular phenotype
disjoint_from: PATO:0070058 ! sustained accommodating phenotype

[Term]
id: PATO:0070057
name: sustained irregular phenotype
synonym: "Petilla ir" EXACT [PMID:18568015]
xref: ilxtr:PetillaSustainedIrregularPhenotype
is_a: PATO:0070047 ! sustained spiking phenotype
disjoint_from: PATO:0070058 ! sustained accommodating phenotype

[Term]
id: PATO:0070058
name: sustained accommodating phenotype
synonym: "Petilla ac" EXACT [PMID:18568015]
xref: ilxtr:PetillaSustainedAccommodatingPhenotype
is_a: PATO:0070047 ! sustained spiking phenotype

[Term]
id: PATO:0070059
name: fast spiking phenotype
xref: ilxtr:FastSpikingPhenotype
is_a: PATO:0070045 ! spiking phenotype

[Term]
id: PATO:0080001
name: quality of a fluid
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