GitHub - pepperell-lab/RGAPepPipe_CHTC: Updated versions of condor scripts for work on CHTC for RGAPepPipe using Docker containers

Name		Name	Last commit message	Last commit date
Latest commit History 66 Commits
dagTemplate		dagTemplate
BWA.sh		BWA.sh
adapters.fa		adapters.fa
bamqc.sh		bamqc.sh
bamqc.submit		bamqc.submit
bwaMEM.submit		bwaMEM.submit
check2Outputs.sh		check2Outputs.sh
checkOutput_removeIntermediates.sh		checkOutput_removeIntermediates.sh
fastq_dump.sh		fastq_dump.sh
fastq_dump.submit		fastq_dump.submit
fastqc.submit		fastqc.submit
fastqc2.submit		fastqc2.submit
multiQC.sh		multiQC.sh
multiQC.submit		multiQC.submit
picard.sh		picard.sh
picard.submit		picard.submit
pilonVCFtoFasta.py		pilonVCFtoFasta.py
pilon_fasta.submit		pilon_fasta.submit
samtools_sort.submit		samtools_sort.submit
samtools_view.sh		samtools_view.sh
samtools_view.submit		samtools_view.submit
trimmomatic.sh		trimmomatic.sh
trimmomatic.submit		trimmomatic.submit
vcf_pilon.sh		vcf_pilon.sh
vcf_pilon.submit		vcf_pilon.submit