pharmaR · jthompson-arcus · Dec 1, 2025 · Dec 1, 2025
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: val.pipeline
 Title: Validation Pipeline Example
-Version: 0.0.1.9000
+Version: 0.0.1.9001
 Authors@R: 
   c(
     person(
@@ -45,16 +45,16 @@ Imports:
     magrittr,
     purrr,
     riskmetric (>= 0.2.5),
-    riskreports (>= 0.0.0.9006),
     rlang,
     stringr,
     tibble,
     tidyr,
-    tools
+    tools,
+    val.report (>= 0.0.0.9006)
 Remotes: 
-    pharmaR/riskmetric,
-    pharmaR/riskreports,
-    Sanofi-Public/risk.assessr,
-    pharmar/riskscore
+    riskmetric=pharmaR/riskmetric,
+    val.report=pharmaR/val.report,
+    risk.assessr=Sanofi-Public/risk.assessr,
+    riskscore=pharmar/riskscore
 Depends: 
     R (>= 4.1.0)
diff --git a/NAMESPACE b/NAMESPACE
@@ -47,7 +47,6 @@ importFrom(riskmetric,all_assessments)
 importFrom(riskmetric,pkg_assess)
 importFrom(riskmetric,pkg_ref)
 importFrom(riskmetric,pkg_score)
-importFrom(riskreports,package_report)
 importFrom(rlang,"!!!")
 importFrom(rlang,expr)
 importFrom(rlang,expr_text)
@@ -71,3 +70,4 @@ importFrom(utils,download.file)
 importFrom(utils,head)
 importFrom(utils,packageVersion)
 importFrom(utils,untar)
+importFrom(val.report,package_report)
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,7 @@
 # val.pipeline (development version)
 
+* Use maintained `val.report` instead of abandoned `riskreports`
+
 # val.pipeline 0.0.1
 
 * Dynamically change the packagemanager date used for `CRAN` repo to reflect the

diff --git a/R/val_pkg.R b/R/val_pkg.R
@@ -23,7 +23,7 @@
 #' @importFrom glue glue
 #' @importFrom utils download.file untar capture.output
 #' @importFrom riskmetric pkg_ref pkg_assess pkg_score all_assessments
-#' @importFrom riskreports package_report
+#' @importFrom val.report package_report
 #' @importFrom dplyr filter pull select arrange as_tibble
 #' @importFrom tools package_dependencies
 #'
@@ -450,14 +450,14 @@ val_pkg <- function(
   # ---- Build Report ----
   #
 
-  # file.edit(system.file("report/package/pkg_template.qmd", package = "riskreports"))
-  options(riskreports_output_dir = reports)
-  pr <- riskreports::package_report(
+  # file.edit(system.file("report/package/pkg_template.qmd", package = "val.report"))
+  options(valreport_output_dir = reports)
+  pr <- val.report::package_report(
     package_name = pkg,
     package_version = ver,
     template_path = system.file("report/package", package = "val.pipeline"),
     output_format = "typst", # Options include html, gfm, and typst. Supplying 'all' does all 3
-    # params list: https://github.com/pharmaR/riskreports/blob/main/inst/report/package/pkg_template.qmd
+    # params list: https://github.com/pharmaR/val.report/blob/main/inst/report/package/pkg_template.qmd
     params = list(
       assessment_path = assessment_file,
       hide_reverse_deps = 'false',
@@ -487,7 +487,7 @@ val_pkg <- function(
     val_date = val_date,
     ref = ref,
     metric_pkg = metric_pkg,
-    # metrics = pkg_assessment, # saved separately for {riskreports}
+    # metrics = pkg_assessment, # saved separately for {val.report}
     decision = decision$final_risk,
     decision_reason = decision_reason,
     final_decision = NA_character_, # Will be set later

diff --git a/dev/repo_bootstrapping.R b/dev/repo_bootstrapping.R
@@ -24,7 +24,7 @@ pak::pak("tidyr")
 
 # GitHub pkgs
 pak::pak("pharmaR/riskmetric")
-pak::pak("pharmaR/riskreports")
+pak::pak("pharmaR/val.report")
 pak::pak("Sanofi-Public/risk.assessr")
 
 # Add to Description
@@ -36,7 +36,7 @@ usethis::use_package("tidyr")
 usethis::use_package("tools")
 usethis::use_package("config")
 usethis::use_dev_package("riskmetric") #, min_version = "0.2.5") 
-usethis::use_dev_package("riskreports")
+usethis::use_dev_package("val.report")
 usethis::use_dev_package("risk.assessr", type = "Suggests")
 usethis::use_dev_package("riskscore", type = "Suggests")
 # renv

diff --git a/inst/report/package/pkg_template.qmd b/inst/report/package/pkg_template.qmd
@@ -45,7 +45,7 @@ knitr::opts_chunk$set(
 )
 library("tools")
 library("knitr")
-library("riskreports")
+library("val.report")
 ```
 
 # Context
@@ -85,18 +85,18 @@ for (field in missing_fields) {
 
 ```{r create_r_riskmetric, warning=FALSE}
 # Assesment produces a data.frame with one row
-r_riskmetric <- riskreports::assessment(d_riskmetric)
+r_riskmetric <- val.report::assessment(d_riskmetric)
 is_na <- sapply(r_riskmetric, function(x) {
   is.na(x) || (is.character(x) && startsWith(x, "no applicable"))
 })
-r_riskmetric$origin <- riskreports:::get_pkg_origin(params$source)
+r_riskmetric$origin <- val.report:::get_pkg_origin(params$source)
 ```
 
 
 ::: {.content-visible when-format="html"}
 
 ```{r info_cards}
-riskreports:::create_metrics_cards(r_riskmetric)
+val.report:::create_metrics_cards(r_riskmetric)
 ```
 
 :::
@@ -118,7 +118,7 @@ knitr::kable(simple_cards)
 :::
 
 ```{r prepare_tables_namespace}
-namespace_table <- riskreports:::prepare_namespace_table(d_riskmetric)
+namespace_table <- val.report:::prepare_namespace_table(d_riskmetric)
 ```
 
 
@@ -238,32 +238,32 @@ if (isTRUE(is_html)) {
 }
 ```
 
-```{r license, eval=!riskreports::is_risk_error(d_riskmetric$license) && !is.null(d_riskmetric$license), results='asis'}
+```{r license, eval=!val.report::is_risk_error(d_riskmetric$license) && !is.null(d_riskmetric$license), results='asis'}
 cat("## License", "\n")
 
 cat("The package uses ", d_riskmetric$license, ".", sep = "")
 ```
 
 
-```{r, eval=!riskreports::is_risk_error(d_riskmetric[["r_cmd_check"]]) || !riskreports::is_risk_error(d_riskmetric[["remote_checks"]]), results='asis'}
+```{r, eval=!val.report::is_risk_error(d_riskmetric[["r_cmd_check"]]) || !val.report::is_risk_error(d_riskmetric[["remote_checks"]]), results='asis'}
 cat("## Code checks", "\n")
 
 cat("Code checks for this package:", "\n")
 ```
 
-```{r r_cmd_check, eval=!riskreports::is_risk_error(d_riskmetric[["r_cmd_check"]]), results='asis'}
+```{r r_cmd_check, eval=!val.report::is_risk_error(d_riskmetric[["r_cmd_check"]]), results='asis'}
 r_cmd <- d_riskmetric[["r_cmd_check"]]
 cat("R CMD check: ", paste(stringr::str_to_title(names(r_cmd)), r_cmd, sep = " - "))
 ```
 
 
 
-```{r remote_checks, eval=!riskreports::is_risk_error(d_riskmetric[["remote_checks"]]), results='asis'}
+```{r remote_checks, eval=!val.report::is_risk_error(d_riskmetric[["remote_checks"]]), results='asis'}
 cat("Remote checks: ", d_riskmetric[["remote_checks"]])
 ```
 
 
-```{r covr_coverage, eval=!riskreports::is_risk_error(d_riskmetric[["covr_coverage"]]), results='asis'}
+```{r covr_coverage, eval=!val.report::is_risk_error(d_riskmetric[["covr_coverage"]]), results='asis'}
 cat("## Code coverage", "\n")
 
 cat("Code coverage for this package: ", d_riskmetric[["covr_coverage"]])
@@ -333,7 +333,7 @@ RNGkind()
 Environmental and options variables affect how package checks and software in it might behave.
 
 ```{r computing, attr.output='.details summary="Environmental variables when running this report"'}
-riskreports::environ_report(exclude = c("GITHUB_PAT", "APPDATA", 
+val.report::environ_report(exclude = c("GITHUB_PAT", "APPDATA", 
                                         "GITHUB", "GITLAB_PAT", "GITLAB",
                                         "ProgramFiles", "ProgramFiles(x86)",
                                         "R_USER", "USERNAME", "USERPROFILE", 
@@ -343,5 +343,5 @@ riskreports::environ_report(exclude = c("GITHUB_PAT", "APPDATA",
 ```
 
 ```{r options, attr.output='.details summary="These are the options set to generate the report"'}
-riskreports::options_report(exclude = c("usethis.full_name", "usethis.description", "usethis.destdir"))
+val.report::options_report(exclude = c("usethis.full_name", "usethis.description", "usethis.destdir"))
 ```
diff --git a/renv.lock b/renv.lock
@@ -3087,49 +3087,6 @@
       "RemoteRef": "master",
       "RemoteSha": "960b4a29d8d0f69b3630b9805b7da39d516c2f67"
     },
-    "riskreports": {
-      "Package": "riskreports",
-      "Version": "0.0.0.9006",
-      "Source": "GitHub",
-      "Title": "Package Validation Reports",
-      "Authors@R": "c( person(\"Lluís\", \"Revilla Sancho\", , \"[email protected]\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-9747-2570\")), person(\"R Validation Hub\", role = \"cph\", email = \"[email protected]\") )",
-      "Description": "Documents package checks for validation in a pharmaceutic  context.",
-      "License": "MIT + file LICENSE",
-      "URL": "https://github.com/pharmaR/riskreports, https://pharmar.github.io/riskreports/",
-      "BugReports": "https://github.com/pharmaR/riskreports/issues",
-      "Depends": [
-        "R (>= 4.3.0)"
-      ],
-      "Imports": [
-        "methods",
-        "htmltools",
-        "quarto (>= 1.4.4)",
-        "reactable"
-      ],
-      "Suggests": [
-        "knitr",
-        "riskmetric (>= 0.2.4)",
-        "rmarkdown",
-        "spelling",
-        "testthat (>= 3.0.0)",
-        "withr (>= 3.0.2)"
-      ],
-      "VignetteBuilder": "knitr",
-      "Config/testthat/edition": "3",
-      "Encoding": "UTF-8",
-      "Language": "en-US",
-      "Roxygen": "list(markdown = TRUE)",
-      "RoxygenNote": "7.3.3",
-      "RemoteType": "github",
-      "RemoteHost": "api.github.com",
-      "RemoteRepo": "riskreports",
-      "RemoteUsername": "pharmaR",
-      "RemoteRef": "HEAD",
-      "RemoteSha": "684454d9ed11c0f8dca01fc50d828a4800d5a3c9",
-      "NeedsCompilation": "no",
-      "Author": "Lluís Revilla Sancho [aut, cre] (ORCID: <https://orcid.org/0000-0001-9747-2570>), R Validation Hub [cph]",
-      "Maintainer": "Lluís Revilla Sancho <[email protected]>"
-    },
     "riskscore": {
       "Package": "riskscore",
       "Version": "0.0.3",
@@ -4191,6 +4148,48 @@
       "Maintainer": "Kirill Müller <[email protected]>",
       "Repository": "RSPM"
     },
+    "val.report": {
+      "Package": "val.report",
+      "Version": "0.0.0.9006",
+      "Source": "GitHub",
+      "Title": "Validation Reports",
+      "Authors@R": "c( person(\"Lluís\", \"Revilla Sancho\", , \"[email protected]\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-9747-2570\")), person(\"R Validation Hub\", role = \"cph\", email = \"[email protected]\") )",
+      "Description": "Documents package checks for validation in a pharmaceutic  context.",
+      "License": "MIT + file LICENSE",
+      "URL": "https://github.com/pharmaR/val.report, https://pharmar.github.io/val.report/",
+      "BugReports": "https://github.com/pharmaR/val.report/issues",
+      "Depends": [
+        "R (>= 4.3.0)"
+      ],
+      "Imports": [
+        "methods",
+        "htmltools",
+        "quarto (>= 1.4.4)",
+        "reactable"
+      ],
+      "Suggests": [
+        "knitr",
+        "riskmetric (>= 0.2.4)",
+        "rmarkdown",
+        "spelling",
+        "testthat (>= 3.0.0)",
+        "withr (>= 3.0.2)"
+      ],
+      "VignetteBuilder": "knitr",
+      "Config/testthat/edition": "3",
+      "Encoding": "UTF-8",
+      "Language": "en-US",
+      "Roxygen": "list(markdown = TRUE)",
+      "RoxygenNote": "7.3.3",
+      "Author": "Lluís Revilla Sancho [aut, cre] (ORCID: <https://orcid.org/0000-0001-9747-2570>), R Validation Hub [cph]",
+      "Maintainer": "Lluís Revilla Sancho <[email protected]>",
+      "RemoteType": "github",
+      "RemoteHost": "api.github.com",
+      "RemoteUsername": "pharmaR",
+      "RemoteRepo": "val.report",
+      "RemoteRef": "main",
+      "RemoteSha": "ee5963ae7be0e2baf7bf86c85a2f01f4095ff70c"
+    },
     "vctrs": {
       "Package": "vctrs",
       "Version": "0.6.5",