在独立的环境中运行 PhaLP 的模型预测部分，并使用 REST API 交互。
# 安装 git-lfs
sudo apt install git-lfs
git lfs install
git clone https://github.com/pianconglab/phalp_prediction.git
cd phalp_prediction
docker build -t phalp_prediction . # 构建 docker 映像docker run --rm -p 8080:8080 phalp_prediction
docker run --rm -p 8080:8080 phalp_prediction -w 2 # 带参数，2线程bio_embeddings.embed.SeqVecEmbedder 的 REST API，接收 JSON 格式的 { "sequence": "..." }，成功则返回 { "result": [...] }，状态码200，否则返回其他错误码与错误原因。
curl -X POST http://localhost:8080/embed \
-H "Content-Type: application/json" \
-i \
-d '{"sequence": "MGSSHHHHHHSSGLVPRGSHMASVQKFPGDANCDGIVDISDAVLIMQTMANPSKYQMTDKGRINADVTGNSDGVTVLDAQFIQSYCLGLVELPPVE"}'HTTP/1.1 200 OK
date: Tue, 20 May 2025 13:27:23 GMT
server: uvicorn
content-length: 21161
content-type: application/json
{"result":[-0.015871543437242508,0.08142930269241333,0.0700032114982605,0.05802898108959198,-0.10813965648412704,0.2818131148815155,0.10973147302865982,-0.0825159102678299,0.15177641808986664,-0.008335720747709274,0.26253607869148254,0.054141391068696976,-0.13867993652820587,-0.022751031443476677,-0.031002352014183998,-0.016311069950461388,-0.024014366790652275,0.11975544691085815,-0.010439041070640087,-0.06587044149637222,-0.19272464513778687,-0.0547134168446064,-0.04398113116621971,0.09263279289007187,0.0826057717204094,-0.009027039632201195,-0.15798787772655487,-0.06308351457118988,0.08826076239347458,0.027455562725663185,0.006284845992922783,-0.07447904348373413,-0.017186246812343597,0.002117427997291088,-0.13457202911376953,-0.061380285769701004,0.09615820646286011,-0.07299909740686417,-0.17324984073638916,0.11760973185300827,-0.00592444883659482,0.3231894373893738,-0.021802647039294243,0.15384803712368011,0.1321377158164978,0.21945488452911377,0.007194864097982645,0.14495503902435303,0.05491326376795769,-0.09189116209745407,0.02411138080060482,-0.08775290846824646,-0.008021506480872631,0.07456646114587784,-0.04243578389286995,0.0031035561114549637,0.06243602931499481,-0.05399395897984505,0.14326055347919464,0.010356138460338116,0.0463518463075161,-0.015114686451852322,-0.10164833813905716,0.0643053725361824,0.03611823543906212,-0.10529384016990662,-0.13327479362487793,0.013007640838623047,-0.21586161851882935,-0.13344787061214447,-0.04428258538246155,0.09864416718482971,0.10851293057203293,0.25428956747055054,0.12676610052585602,-0.09791714698076248,0.01091672945767641,0.03679829090833664,-0.004580107983201742,-0.13041184842586517,-0.06699904054403305,-0.09325023740530014,-0.0011461167596280575,-0.22833216190338135,0.11475015431642532,-0.04177470505237579,0.11651012301445007,-0.08751953393220901,-0.24301964044570923,-0.04762187600135803,0.14050281047821045,0.05157481133937836,-0.1523263305425644,0.09361568838357925,0.1301085650920868,0.09486503154039383,0.04819897189736366,0.04381951689720154,0.03233404830098152,-0.29762426018714905,0.0453556589782238,-0.003143568756058812,0.1152723953127861,0.14922676980495453,0.044395554810762405,0.25495895743370056,-0.14487123489379883,-0.009943690150976181,-0.124347023665905,0.16940893232822418,0.02492986060678959,0.040784914046525955,0.029582956805825233,0.17355380952358246,0.15586760640144348,0.11029338091611862,0.1894308179616928,-0.01727522350847721,0.03236006572842598,-0.0047774603590369225,-0.17148758471012115,-0.09106368571519852,-0.07849443703889847,0.04262106493115425,-0.01627366989850998,0.05374874547123909,-0.039301689714193344,0.1455584019422531,-0.07824773341417313,-0.08112239092588425,-0.11231601238250732,-0.202744722366333,-0.13513422012329102,0.055333416908979416,-0.009890618734061718,0.17824362218379974,0.11652538180351257,-0.20276111364364624,0.15365828573703766,-0.16331367194652557,-0.11616218835115433,-0.22903896868228912,0.05307234823703766,0.1394362896680832,-0.13907282054424286,-0.06262076646089554,-0.036832164973020554,0.04284418746829033,0.09781839698553085,0.18745625019073486,-0.05017726495862007,-0.017356403172016144,0.10965549200773239,0.04844607412815094,-0.05130508542060852,-0.03344850242137909,0.11094730347394943,0.09858082979917526,-0.209706649184227,0.12591715157032013,0.030996128916740417,-0.1498493254184723,-0.09567586332559586,0.07641997188329697,0.07119058072566986,0.01209393423050642,-0.03421333059668541,-0.2228195071220398,-0.05256131291389465,0.03093063272535801,0.09340590983629227,0.10051868110895157,0.18579740822315216,-0.044995006173849106,0.05842609331011772,-0.06159516051411629,0.02569408528506756,-0.07953145354986191,0.13008378446102142,0.08178942650556564,0.008436371572315693,0.13375644385814667,0.05163773521780968,0.17841672897338867,-0.029886385425925255,0.04607187584042549,0.10003281384706497,-0.027583135291934013,0.1905280351638794,0.05730566382408142,0.030126547440886497,0.08226840943098068,-0.14089174568653107,0.00970903504639864,0.02363879419863224,0.0974573865532875,0.08256110548973083,-0.06290405243635178,0.18467338383197784,-0.01699172519147396,-0.17608261108398438,0.2890009582042694,-0.13576377928256989,-0.1084463819861412,0.08560476452112198,0.14012391865253448,0.15364034473896027,0.013552424497902393,-0.03651674836874008,0.1471574604511261,0.040307845920324326,-0.05680370330810547,0.22553123533725739,-0.16037577390670776,-0.044853802770376205,-0.2586086392402649,0.0064555383287370205,-0.023380005732178688,0.05038381740450859,0.035461291670799255,0.0834539532661438,0.10053683072328568,-0.08281759172677994,0.18175838887691498,0.06045554578304291,0.1616152822971344,0.11223068088293076,0.03546585515141487,-0.061809223145246506,-0.01662544533610344,0.02128762938082218,0.10266900062561035,-0.10515093058347702,0.08002278208732605,-0.0244742538779974,-0.04223404452204704,-0.11469119787216187,0.017119871452450752,-0.23637378215789795,-0.06936318427324295,0.06748033314943314,0.14972607791423798,-0.12320556491613388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PhaLP 的 VAL/endolysin 分类模型，接收 JSON 格式的 { "sequence": "..." }，成功则返回 { "result": "" }，状态码200，否则返回其他错误码与错误原因。
curl -X POST http://localhost:8080/classify \
-H "Content-Type: application/json" \
-i \
-d '{"sequence": "MEMISNNLNWFVGVVEDRMDPLKLGRVRVRVVGLHPPQRAQGDVMGIPTEKLPWMSVIQPITSAAMSGIGGSVTGPVEGTRVYGHFLDKWKTNGIVLGTYGGIVREKPNRLEGFSDPTGQYPRRLGNDTNVLNQGGEVGYDSSSNVIQDSNLDTAINPDDRPLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLSAMAATVAKSSDPADPPIPNDSRILFKEPVSSYKGEYPYVHTMETESGHIQEFDDTPGQERYRLVHPTGTYEEVSPSGRRTRKTVDNLYDITNADGNFLVAGDKKTNVGGSEIYYNMDNRLHQIDGSNTIFVRGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG"}'HTTP/1.1 200 OK
date: Sun, 25 May 2025 04:11:26 GMT
server: uvicorn
content-length: 16
content-type: application/json
{"result":"VAL"}
- 容器内 CUDA 版本为 11.7，无法在最低支持 CUDA 11.8 及以上的 GPU 上运行。
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