Fixes coverage reporting and limits it to main branches only

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '10495100'
+ValidationKey: '10569520'
 AutocreateReadme: yes
 AutocreateCITATION: yes
 AcceptedWarnings:

.github/workflows/check.yaml

@@ -60,9 +60,31 @@ jobs:
           lucode2::check(runLinter = FALSE)
 
       - name: Test coverage
+        if: ${{ github.event_name != 'pull_request' }}
         shell: Rscript {0}
         run: |
           nonDummyTests <- setdiff(list.files("./tests/testthat/"), c("test-dummy.R", "_snaps"))
-          if(length(nonDummyTests) > 0 && !lucode2:::loadBuildLibraryConfig()[["skipCoverage"]]) covr::codecov(quiet = FALSE)
+          if(length(nonDummyTests) > 0 && !lucode2:::loadBuildLibraryConfig()[["skipCoverage"]]) {
+            coverage <- covr::package_coverage(quiet = FALSE)
+            # The following function might be unnecessary if r-lib/covr#616 gets merged
+            to_simple_codecov <- function(coverage) {
+              fullLineCoverage <- covr:::per_line(coverage)
+              data <- Map(function(fileCoverage) {
+                resultCoverage <- lapply(fileCoverage$coverage, jsonlite::unbox)
+                names(resultCoverage) <- seq_along(resultCoverage)
+                return(resultCoverage)
+              }, fullLineCoverage)
+              return(jsonlite::toJSON(list("coverage" = data), na = "null"))
+            }
+            writeLines(to_simple_codecov(coverage), "simple-codecov.json")
+          }
         env:
           NOT_CRAN: "true"
+
+      - uses: codecov/codecov-action@v4
+        if: ${{ github.event_name != 'pull_request' }}
+        with:
+          file: ./simple-codecov.json
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}

CITATION.cff

@@ -2,8 +2,8 @@ cff-version: 1.2.0
 message: If you use this software, please cite it using the metadata from this file.
 type: software
 title: 'lucode2: Code Manipulation and Analysis Tools'
-version: 0.51.7
-date-released: '2025-07-31'
+version: 0.52.0
+date-released: '2025-08-26'
 abstract: A collection of tools which allow to manipulate and analyze code.
 authors:
 - family-names: Dietrich

DESCRIPTION

@@ -1,8 +1,8 @@
 Type: Package
 Package: lucode2
 Title: Code Manipulation and Analysis Tools
-Version: 0.51.7
-Date: 2025-07-31
+Version: 0.52.0
+Date: 2025-08-26
 Authors@R: c(
     person("Jan Philipp", "Dietrich", , "[email protected]", role = c("aut", "cre"),
            comment = c(affiliation = "Potsdam Institute for Climate Impact Research", ORCID = "0000-0002-4309-6431")),

README.md

@@ -1,6 +1,6 @@
 # Code Manipulation and Analysis Tools
 
-R package **lucode2**, version **0.51.7**
+R package **lucode2**, version **0.52.0**
 
 [![CRAN status](https://www.r-pkg.org/badges/version/lucode2)](https://cran.r-project.org/package=lucode2) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4389418.svg)](https://doi.org/10.5281/zenodo.4389418) [![R build status](https://github.com/pik-piam/lucode2/workflows/check/badge.svg)](https://github.com/pik-piam/lucode2/actions) [![codecov](https://codecov.io/gh/pik-piam/lucode2/branch/master/graph/badge.svg)](https://app.codecov.io/gh/pik-piam/lucode2) [![r-universe](https://pik-piam.r-universe.dev/badges/lucode2)](https://pik-piam.r-universe.dev/builds)
 
@@ -39,7 +39,7 @@ In case of questions / problems please contact Jan Philipp Dietrich <dietrich@pi
 
 To cite package **lucode2** in publications use:
 
-Dietrich J, Sauer P, Klein D, Giannousakis A, Bonsch M, Bodirsky B, Baumstark L, Richters O, Pflüger M (2025). "lucode2: Code Manipulation and Analysis Tools." doi:10.5281/zenodo.4389418 <https://doi.org/10.5281/zenodo.4389418>, Version: 0.51.7, <https://github.com/pik-piam/lucode2>.
+Dietrich J, Sauer P, Klein D, Giannousakis A, Bonsch M, Bodirsky B, Baumstark L, Richters O, Pflüger M (2025). "lucode2: Code Manipulation and Analysis Tools." doi:10.5281/zenodo.4389418 <https://doi.org/10.5281/zenodo.4389418>, Version: 0.52.0, <https://github.com/pik-piam/lucode2>.
 
 A BibTeX entry for LaTeX users is
 
@@ -48,9 +48,9 @@ A BibTeX entry for LaTeX users is
   title = {lucode2: Code Manipulation and Analysis Tools},
   author = {Jan Philipp Dietrich and Pascal Sauer and David Klein and Anastasis Giannousakis and Markus Bonsch and Benjamin Leon Bodirsky and Lavinia Baumstark and Oliver Richters and Mika Pflüger},
   doi = {10.5281/zenodo.4389418},
-  date = {2025-07-31},
+  date = {2025-08-26},
   year = {2025},
   url = {https://github.com/pik-piam/lucode2},
-  note = {Version: 0.51.7},
+  note = {Version: 0.52.0},
 }
 ```

inst/extdata/check.yaml

@@ -60,9 +60,31 @@ jobs:
           lucode2::check(runLinter = FALSE)
 
       - name: Test coverage
+        if: ${{ github.event_name != 'pull_request' }}
         shell: Rscript {0}
         run: |
           nonDummyTests <- setdiff(list.files("./tests/testthat/"), c("test-dummy.R", "_snaps"))
-          if(length(nonDummyTests) > 0 && !lucode2:::loadBuildLibraryConfig()[["skipCoverage"]]) covr::codecov(quiet = FALSE)
+          if(length(nonDummyTests) > 0 && !lucode2:::loadBuildLibraryConfig()[["skipCoverage"]]) {
+            coverage <- covr::package_coverage(quiet = FALSE)
+            # The following function might be unnecessary if r-lib/covr#616 gets merged
+            to_simple_codecov <- function(coverage) {
+              fullLineCoverage <- covr:::per_line(coverage)
+              data <- Map(function(fileCoverage) {
+                resultCoverage <- lapply(fileCoverage$coverage, jsonlite::unbox)
+                names(resultCoverage) <- seq_along(resultCoverage)
+                return(resultCoverage)
+              }, fullLineCoverage)
+              return(jsonlite::toJSON(list("coverage" = data), na = "null"))
+            }
+            writeLines(to_simple_codecov(coverage), "simple-codecov.json")
+          }
         env:
           NOT_CRAN: "true"
+
+      - uses: codecov/codecov-action@v4
+        if: ${{ github.event_name != 'pull_request' }}
+        with:
+          file: ./simple-codecov.json
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}