prody ProDy Archived-issues Discussions
Archived Issues Discussions
These are old issues that were either unresolved, open-ended or were more feature request/ enhancement oriented.
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You must be logged in to vote InSty: NameError: name 'Interactions' is not defined
ResolvedThis issue is kept open so that others can benefit from the discussion. -
You must be logged in to vote Custom Probe(user-defined molecules) Molecules in DruGUI for Mixed-Solvent Simulations
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote -
You must be logged in to vote Does ProDy support identifying missing residues from .cif files?
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote Pdbfixer in Clustenm
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote trimPDBEnsemble doesn't work when inputs to buildPDBEnsemble are sele
UnresolvedThe issue was unresolved. May or may not be a bug. -
You must be logged in to vote Adaptive ANM should handle reduce and slice
EnhancementImprovement to an already-existing feature. -
You must be logged in to vote KeyError: 'B_iso_or_equiv'
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote Support for Python 3.13
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote rmsd and norm should be documented in showProjection
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote PCA buildCovariance and app do not superpose well for projections
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote Bond orders
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote Waters bridging between chains
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote new cif fields (Annotation of Protein Modifications in the PDB)
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote Pdb ligand format changes
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote float division by zero exception raised if using prody_align with mmCIF files
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote bad change to mmCIF chain vs segment?
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote How to set the path for ProDy in VMD
UnresolvedThe issue was unresolved. May or may not be a bug. -
You must be logged in to vote add iterpose to catdcd
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote It's now difficult to get pfam full alignments
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote CoMD Analysis Issue - Coordsets must have more than 3 coordinate sets
EnhancementImprovement to an already-existing feature. -
You must be logged in to vote HTMD interface
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote PDBe Unveils New Streamlined FTP Structure and Enhanced Ligand Data Files
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote longer compound IDs coming
Feature requestAdding a feature that does not yet exist. -
You must be logged in to vote most versions of adjustText don't work
Feature requestAdding a feature that does not yet exist.
