Merge pull request #5146 from pybamm-team/release/v25.8.0

Release v25.8.0

Author: kratman

.all-contributorsrc

@@ -12,3 +12,5 @@ ff6d81c01331c7d269303b4a8321d9881bdf98fa
 60ebd4148059a95428a496f4f55c1175ead362d3
 # implemented cleaner string formatting via f-strings - https://github.com/pybamm-team/PyBaMM/pull/3890
 f395819d1c874071b7e76e32ec4f0bbe42462b48
+# activated isort rule via ruff - https://github.com/pybamm-team/PyBaMM/pull/5003
+3b9a07b45972ebcb07fcd950292f7052e8f313b4

.git-blame-ignore-revs

@@ -2,9 +2,8 @@ name: Build and push Docker images to Docker Hub
 
 on:
   workflow_dispatch:
-  push:
-    branches:
-    - develop
+  release:
+    types: [published]
 
 permissions: {}
 
@@ -28,7 +27,7 @@ jobs:
 
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@b5ca514318bd6ebac0fb2aedd5d36ec1b5c232a2 # v3.10.0
+        uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # v3.11.1
         with:
           cache-binary: false
       - name: Login to Docker Hub
@@ -39,13 +38,13 @@ jobs:
 
 
       - name: Build and push Docker image to Docker Hub
-        uses: docker/build-push-action@1dc73863535b631f98b2378be8619f83b136f4a0 # v6.17.0
+        uses: docker/build-push-action@263435318d21b8e681c14492fe198d362a7d2c83 # v6.18.0
         with:
           context: .
           file: scripts/Dockerfile
           tags: pybamm/pybamm:latest
           push: true
-          platforms: linux/amd64, linux/arm64
+          platforms: linux/amd64
           no-cache: true
 
       - name: List built image(s)

.github/workflows/docker.yml

@@ -55,7 +55,6 @@ jobs:
             --exclude-path ./scripts/update_version.py
             --exclude-path asv.conf.json
             --exclude-path docs/conf.py
-            --exclude-path all_contributors.md
             './**/*.rst'
             './**/*.md'
             './**/*.py'

.github/workflows/lychee_url_checker.yml

@@ -13,7 +13,8 @@ jobs:
   build:
     runs-on: ubuntu-latest
     permissions:
-      issues: read
+      issues: write
+      pull-requests: write
       contents: read
     if: |
       github.event.comment.author_association != 'OWNER' &&

.github/workflows/need_reply_remove.yml

@@ -12,6 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     permissions:
       issues: read
+      pull-requests: read
       contents: read
     if: github.repository == 'pybamm-team/PyBaMM'
     steps:

.github/workflows/needs_reply.yml

@@ -113,8 +113,8 @@ jobs:
       - name: Run benchmarks
         run: |
           asv machine --machine "GitHubRunner"
-          asv run -m "GitHubRunner" -s ${{ env.NCOMMITS }} \
-          ${{ env.COMMIT_START }}..${{ env.COMMIT_END }}
+          asv run -m "GitHubRunner" -s $NCOMMITS \
+          $COMMIT_START..$COMMIT_END
 
       - name: Upload results as artifact
         uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2

.github/workflows/run_benchmarks_over_history.yml

@@ -30,8 +30,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ ubuntu-latest, macos-13, macos-14, windows-latest ]
-        python-version: [ "3.9", "3.10", "3.11", "3.12" ]
+        os: [ ubuntu-latest, macos-13, macos-latest, windows-latest ]
+        python-version: ["3.10", "3.11", "3.12"]
     name: Tests (${{ matrix.os }} / Python ${{ matrix.python-version }})
 
     steps:
@@ -48,7 +48,7 @@ jobs:
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Install macOS system dependencies
-        if: matrix.os == 'macos-13' || matrix.os == 'macos-14'
+        if: matrix.os == 'macos-13' || matrix.os == 'macos-latest'
         env:
           HOMEBREW_NO_INSTALL_CLEANUP: 1
           HOMEBREW_NO_AUTO_UPDATE: 1

.github/workflows/run_periodic_tests.yml

@@ -34,7 +34,7 @@ jobs:
           persist-credentials: false
 
       - name: "Run analysis"
-        uses: ossf/scorecard-action@f49aabe0b5af0936a0987cfb85d86b75731b0186 # v2.4.1
+        uses: ossf/scorecard-action@05b42c624433fc40578a4040d5cf5e36ddca8cde # v2.4.2
         with:
           results_file: results.sarif
           results_format: sarif
@@ -65,6 +65,6 @@ jobs:
       # Upload the results to GitHub's code scanning dashboard (optional).
       # Commenting out will disable upload of results to your repo's Code Scanning dashboard
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@ff0a06e83cb2de871e5a09832bc6a81e7276941f # v3.28.18
+        uses: github/codeql-action/upload-sarif@181d5eefc20863364f96762470ba6f862bdef56b # v3.29.2
         with:
           sarif_file: results.sarif

.github/workflows/scorecard.yml

@@ -48,8 +48,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, macos-13, macos-14, windows-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        os: [ubuntu-latest, macos-13, macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12"]
     name: Tests (${{ matrix.os }} / Python ${{ matrix.python-version }})
 
     steps:
@@ -59,7 +59,7 @@ jobs:
           persist-credentials: false
 
       - name: Install Linux system dependencies
-        uses: awalsh128/cache-apt-pkgs-action@7ca5f46d061ad9aa95863cd9b214dd48edef361d # v1.5.0
+        uses: awalsh128/cache-apt-pkgs-action@4c82c3ccdc1344ee11e9775dbdbdf43aa8a5614e # v1.5.1
         if: matrix.os == 'ubuntu-latest'
         with:
           packages: gfortran gcc graphviz pandoc
@@ -74,7 +74,7 @@ jobs:
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Install macOS system dependencies
-        if: matrix.os == 'macos-13' || matrix.os == 'macos-14'
+        if: matrix.os == 'macos-13' || matrix.os == 'macos-latest'
         env:
           HOMEBREW_NO_INSTALL_CLEANUP: 1
           HOMEBREW_NO_AUTO_UPDATE: 1
@@ -138,7 +138,7 @@ jobs:
           persist-credentials: false
 
       - name: Install Linux system dependencies
-        uses: awalsh128/cache-apt-pkgs-action@7ca5f46d061ad9aa95863cd9b214dd48edef361d # v1.5.0
+        uses: awalsh128/cache-apt-pkgs-action@4c82c3ccdc1344ee11e9775dbdbdf43aa8a5614e # v1.5.1
         with:
           packages: graphviz pandoc
           execute_install_scripts: true
@@ -184,7 +184,7 @@ jobs:
           persist-credentials: false
 
       - name: Install Linux system dependencies
-        uses: awalsh128/cache-apt-pkgs-action@7ca5f46d061ad9aa95863cd9b214dd48edef361d # v1.5.0
+        uses: awalsh128/cache-apt-pkgs-action@4c82c3ccdc1344ee11e9775dbdbdf43aa8a5614e # v1.5.1
         with:
           packages: gfortran gcc graphviz pandoc
           execute_install_scripts: true
@@ -227,7 +227,7 @@ jobs:
           persist-credentials: false
 
       - name: Install Linux system dependencies
-        uses: awalsh128/cache-apt-pkgs-action@7ca5f46d061ad9aa95863cd9b214dd48edef361d # v1.5.0
+        uses: awalsh128/cache-apt-pkgs-action@4c82c3ccdc1344ee11e9775dbdbdf43aa8a5614e # v1.5.1
         with:
           packages: gfortran gcc graphviz
           execute_install_scripts: true