Update pyodide version

mcp-run-python/deno.json

@@ -16,8 +16,7 @@
     "@modelcontextprotocol/sdk": "npm:@modelcontextprotocol/sdk@^1.15.1",
     "@std/cli": "jsr:@std/cli@^1.0.15",
     "@std/path": "jsr:@std/path@^1.0.8",
-    // do NOT upgrade above this version until there is a workaround for https://github.com/pyodide/pyodide/pull/5621
-    "pyodide": "npm:[email protected]",
+    "pyodide": "npm:[email protected]",
     "zod": "npm:zod@^3.24.2"
   },
   "fmt": {

mcp-run-python/src/runCode.ts

@@ -13,10 +13,10 @@ export async function runCode(
   files: CodeFile[],
   log: (level: LoggingLevel, data: string) => void,
 ): Promise<RunSuccess | RunError> {
-  // remove once we can upgrade to pyodide 0.27.7 and console.log is no longer used.
-  const realConsoleLog = console.log
-  // deno-lint-ignore no-explicit-any
-  console.log = (...args: any[]) => log('debug', args.join(' '))
+  // // remove once we can upgrade to pyodide 0.27.7 and console.log is no longer used.
+  // const realConsoleLog = console.log;
+  // // deno-lint-ignore no-explicit-any
+  // console.log = (...args: any[]) => log("debug", args.join(" "));
 
   const output: string[] = []
   const pyodide = await loadPyodide({
@@ -90,7 +90,7 @@ export async function runCode(
   }
   sys.stdout.flush()
   sys.stderr.flush()
-  console.log = realConsoleLog
+  // console.log = realConsoleLog;
   return runResult
 }
 

mcp-run-python/test_mcp_servers.py

@@ -171,6 +171,8 @@ async def test_list_tools(mcp_session: ClientSession) -> None:
 <status>run-error</status>
 <error>
 Traceback (most recent call last):
+    ...<9 lines>...
+    .run_async(globals, locals)
   File "main.py", line 1, in <module>
     print(unknown)
           ^^^^^^^
@@ -225,7 +227,8 @@ async def logging_callback(params: types.LoggingMessageNotificationParams) -> No
 </return_value>\
 """
             assert content.text == expected_output
-            assert len(logs) >= 18
+            assert len(logs) >= 16
             assert re.search(
-                r"debug: Didn't find package numpy\S+?\.whl locally, attempting to load from", '\n'.join(logs)
+                r"debug: loadPackage: Didn't find package numpy\S*\.whl locally, attempting to load from",
+                '\n'.join(logs),
             )