Merge branch 'pyjanitor-devs:dev' into ci/testing-env

Author: Zeroto521

.github/workflows/code-checks.yml

@@ -2,6 +2,10 @@ name: Code style checks
 
 on: [push, pull_request]
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   linting:
     runs-on: ubuntu-latest

.github/workflows/tests.yml

@@ -2,6 +2,10 @@ name: unit tests
 
 on: [pull_request]
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   run-tests:
     name: ${{ matrix.os }}, ${{ matrix.python-version }}, ${{ matrix.env }}

.pre-commit-config.yaml

@@ -9,7 +9,7 @@ repos:
   - id: check-yaml
   - id: check-added-large-files
 - repo: https://github.com/psf/black
-  rev: 22.6.0
+  rev: 22.10.0
   hooks:
   - id: black
     args: [--config, pyproject.toml]
@@ -24,7 +24,7 @@ repos:
   - id: darglint
     args: [-v 2]  # this config makes the error messages a bit less cryptic.
 - repo: https://github.com/PyCQA/flake8
-  rev: 4.0.1
+  rev: 5.0.4
   hooks:
     - id: flake8
       args: [--exclude, nbconvert_config.py]

CHANGELOG.md

@@ -3,10 +3,10 @@
 ## [Unreleased]
 
 -   [DOC] Updated developer guide docs.
--   [ENH] Allow column selection/renaming within conditional_join. #1102. Also allow first or last match. #1020 @samukweku.
+-   [ENH] Allow column selection/renaming within conditional_join. Issue #1102. Also allow first or last match. Issue #1020 @samukweku.
 -   [ENH] New decorator `deprecated_kwargs` for breaking API. #1103 @Zeroto521
--   [ENH] Extend select_columns to support non-string columns. Also allow selection on MultiIndex columns via level parameter. #1105 @samukweku
--   [ENH] Performance improvement for groupby_topk. #1093 @samukweku
+-   [ENH] Extend select_columns to support non-string columns. Also allow selection on MultiIndex columns via level parameter. Issue #1105 @samukweku
+-   [ENH] Performance improvement for groupby_topk. Issue #1093 @samukweku
 -   [ENH] `min_max_scale` drop `old_min` and `old_max` to fit sklearn's method API. Issue #1068 @Zeroto521
 -   [ENH] Add `jointly` option for `min_max_scale` support to transform each column values or entire values. Default transform each column, similar behavior to `sklearn.preprocessing.MinMaxScaler`. (Issue #1067, PR #1112, PR #1123) @Zeroto521
 -   [INF] Require pyspark minimal version is v3.2.0 to cut duplicates codes. Issue #1110 @Zeroto521
@@ -19,6 +19,15 @@
 -   [INF] Set independent environment for building documentation. PR #1141 @Zeroto521
 -   [DOC] Add local documentation preview via github action artifact. PR #1149 @Zeroto521
 -   [ENH] Enable `encode_categorical` handle 2 (or more ) dimensions array. PR #1153 @Zeroto521
+-   [ENH] Faster computation for a single non-equi join, with a numba engine. Issue #1102 @samukweku
+-   [TST] Fix testcases failing on Window. Issue #1160 @Zeroto521, and @samukweku
+-   [INF] Cancel old workflow runs via Github Action `concurrency`. PR #1161 @Zeroto521
+-   [ENH] Faster computation for non-equi join, with a numba engine. Speed improvement for left/right joins when `sort_by_appearance` is False. Issue #1102 @samukweku
+-   [BUG] Avoid `change_type` mutating original `DataFrame`. PR #1162 @Zeroto521
+-   [ENH] The parameter `column_name` of `change_type` totally supports inputing multi-column now. #1163 @Zeroto521
+-   [ENH] Fix error when `sort_by_appearance=True` is combined with `dropna=True`. Issue #1168 @samukweku
+-   [ENH] Add explicit default parameter to `case_when` function. Issue #1159 @samukweku
+
 
 ## [v0.23.1] - 2022-05-03
 

janitor/biology.py

@@ -57,13 +57,13 @@ def join_fasta(
         >>> df = pd.DataFrame({"sequence_accession":
         ... ["SEQUENCE_1", "SEQUENCE_2", ]})
 
-        >>> df = df.join_fasta(
+        >>> df = df.join_fasta(  # doctest: +SKIP
         ...     filename=tf.name,
         ...     id_col='sequence_accession',
         ...     column_name='sequence',
         ... )
 
-        >>> df.sequence
+        >>> df.sequence  # doctest: +SKIP
         0    MTEITAAMVKELRESTGAGMMDCK
         1           SATVSEINSETDFVAKN
         Name: sequence, dtype: object