Merge pull request BAMresearch#80 from BAMresearch/79-clean-up

79 clean up

Author: pdiercks

.github/workflows/main.yml

@@ -72,35 +72,6 @@ jobs:
           retention-days: 1
           if-no-files-found: error
 
-  run-cwl-auto-conda:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: checkout-repository
-        uses: actions/checkout@v2
-
-      - name: install-basic-deps
-        uses: ./.github/actions/install-basic-deps
-
-      - name: prepare-conda
-        uses: conda-incubator/setup-miniconda@v2
-  
-      - name: run-workflow
-        shell: bash -l {0}
-        run: |
-          sudo apt-get update && sudo apt-get install --no-install-recommends --yes python3-pip
-          python3 -m pip install cwltool[deps]
-          cd $GITHUB_WORKSPACE/exemplary_workflow/cwl
-          python3 -m cwltool --debug --beta-conda-dependencies wf_run_exemplary_wf.cwl
-
-      - name: upload-paper-artifact
-        uses: actions/upload-artifact@v2
-        with:
-          name: paper
-          path: ./exemplary_workflow/cwl/paper.pdf
-          retention-days: 1
-          if-no-files-found: error
-
   run-nextflow:
     runs-on: ubuntu-latest