Search results

Exclude additional regions from training data

Status: Open.

#36 In quinlan-lab/constraint-tools;

· petermchale opened on Jan 18, 2022

generalize to two independent variables representing: number of training samples, and number of prediction samples

Status: Open.

#16 In quinlan-lab/constraint-tools;

· petermchale opened on Oct 19, 2021

Reconcile discrepancies in how coverage data is stored/reference genomes used in different gnomad versions.

Status: Open.

#14 In quinlan-lab/constraint-tools;

· jkunisak opened on Sep 8, 2021

extend report subcommand to report 4 profiles: observed and expected mutation counts for both "synonymous" and "non-synonymous" sites

Status: Open.

#11 In quinlan-lab/constraint-tools;

· petermchale opened on Aug 19, 2021

Add functionality to get expected mutation count that considers specific mutation signatures/spectra

Status: Open.

#10 In quinlan-lab/constraint-tools;

· jkunisak opened on Aug 17, 2021

Ensure that mutations are from only one tumor per patient

Status: Open.

#4 In quinlan-lab/constraint-tools;

· petermchale opened on Jun 24, 2021

Stratify variants by cancer type

Status: Open.

#3 In quinlan-lab/constraint-tools;

· petermchale opened on Jun 24, 2021

Tumor type names are different across working groups (i.e. TCGA and ICGC)

Status: Open.

#1 In quinlan-lab/constraint-tools;

· jkunisak opened on Jun 7, 2021