Use dependency groups instead of optional deps for dev

.pre-commit-config.yaml

@@ -1,15 +1,27 @@
 repos:
-  - repo: https://github.com/pycqa/isort
-    rev: 5.12.0
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: "v5.0.0"
     hooks:
-      - id: isort
-        args: ["--profile", "black", "--filter-files"]
-  - repo: https://github.com/psf/black
-    rev: 22.6.0
+      - id: check-added-large-files
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-symlinks
+      - id: check-yaml
+      - id: debug-statements
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+      - id: name-tests-test
+        args: ["--pytest-test-first"]
+      - id: requirements-txt-fixer
+      - id: trailing-whitespace
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "v0.12.1"
     hooks:
-      - id: black-jupyter
-  - repo: https://github.com/PyCQA/flake8
-    rev: 4.0.1
+      - id: ruff-format
+      - id: ruff-check
+        args: ["--fix", "--show-fixes"]
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.4.1
     hooks:
-      - id: flake8
-        args: [--max-line-length=88, "--extend-ignore=E203,E741"]
+      - id: codespell

pyproject.toml

@@ -1,13 +1,17 @@
 [build-system]
-requires = ["setuptools>=64", "setuptools_scm[toml]>=8"]
-build-backend = "setuptools.build_meta"
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
 
 [project]
 name = "pyvisgrid"
 dynamic = ["version"]
 description = " Grid and visualize observations of radio interferometers."
-readme = "README.md"
-authors = [{ name = "Kevin Schmitz, Tom Groß, Anno Knierim" }]
+readme = "README.rst"
+authors = [
+  { name = "Kevin Schmitz", email = "kevin2.schmitz@tu-dortmund.de" },
+  { name = "Tom Groß", email = "tom.gross@tu-dortmund.de" },
+  { name = "Anno Knierim", email = "anno.knierim@tu-dortmund.de" },
+]
 maintainers = [
   { name = "Kevin Schmitz", email = "kevin2.schmitz@tu-dortmund.de" },
   { name = "Tom Groß", email = "tom.gross@tu-dortmund.de" },
@@ -32,30 +36,46 @@ dependencies = [
   "astropy<=6.1.0",
   "click",
   "h5py",
-  "ipython",
-  "jupyter",
-  "matplotlib",
   "numpy",
   "pandas",
+  "matplotlib",
   "scipy",
   "toml",
   "torch",
   "tqdm",
   "casatools",
-  "pyvisgen@git+https://github.com/radionets-project/pyvisgen#egg=main",
+  "pyvisgen@git+https://github.com/radionets-project/pyvisgen.git@main",
 ]
 
-[project.optional-dependencies]
-
-tests = ["h5py", "pytest >= 7.0", "pytest-cov", "tomli"]
-
-dev = ["pre-commit"]
+[dependency-groups]
+tests = [
+  "h5py",
+  "pytest >= 7.0",
+  "pytest-cov",
+  "tomli",
+]
+dev = [
+  "pre-commit",
+  "ipython",
+  "jupyter",
+  {include-group = "tests"},
+]
 
 [project.urls]
 repository = "https://github.com/radionets-project/pyvisgrid"
 
-[tool.setuptools_scm]
-write_to = "pyvisgrid/_version.py"
+[tool.hatch.version]
+source = "vcs"
+
+[tool.hatch.build.hooks.vcs]
+version-file = "pyvisgrid/_version.py"
+
+
+[tool.hatch.build.targets.wheel]
+packages = ["."]
 
-[tool.setuptools.packages.find]
-where = ["."]
+# as long as we still directly install
+# pyvisgen from git we need to set this
+# to true
+[tool.hatch.metadata]
+allow-direct-references = true

pyvisgrid/core/gridder.py

@@ -238,7 +238,7 @@ def from_pyvisgen(
         ----------
 
         obs : pyvisgen.simulation.Observation
-        The obeservation which is returned by the
+        The observation which is returned by the
         ``pyvisgen.simulation.vis_loop`` function.
 
         vis_data : pyvisgen.simulation.Visibilities
@@ -519,7 +519,7 @@ def plot_ungridded_uv(self, **kwargs):
         Default is ``None``, meaning the plot won't be saved.
 
         save_args : dict, optional
-        The additional arugments passed to the ``fig.savefig`` call.
+        The additional arguments passed to the ``fig.savefig`` call.
         Default is ``{"bbox_inches":"tight"}``.
 
         fig : matplotlib.figure.Figure | None, optional
@@ -640,7 +640,7 @@ def plot_mask(self, stokes_component: str = "I", **kwargs):
         Default is ``None``, meaning the plot won't be saved.
 
         save_args : dict, optional
-        The additional arugments passed to the ``fig.savefig`` call.
+        The additional arguments passed to the ``fig.savefig`` call.
         Default is ``{"bbox_inches":"tight"}``.
 
         fig : matplotlib.figure.Figure | None, optional
@@ -752,7 +752,7 @@ def plot_dirty_image(self, stokes_component: str = "I", **kwargs):
         Default is ``None``, meaning the plot won't be saved.
 
         save_args : dict, optional
-        The additional arugments passed to the ``fig.savefig`` call.
+        The additional arguments passed to the ``fig.savefig`` call.
         Default is ``{"bbox_inches":"tight"}``.
 
         fig : matplotlib.figure.Figure | None, optional

pyvisgrid/core/stokes.py

@@ -93,7 +93,7 @@ def compute_single_stokes_component(
     stokes_comp_2 : int
         Index of second stokes visibility.
     sign : str
-        Wether to add or substract ``stokes_comp_1`` and ``stokes_comp_2``.
+        Whether to add or subtract ``stokes_comp_1`` and ``stokes_comp_2``.
         Valid values are ``'+'`` or ``'-'``.
 
     Returns

pyvisgrid/plotting/plotting.py

@@ -168,7 +168,7 @@ def plot_ungridded_uv(
     Default is ``None``, meaning the plot won't be saved.
 
     save_args : dict, optional
-    The additional arugments passed to the ``fig.savefig`` call.
+    The additional arguments passed to the ``fig.savefig`` call.
     Default is ``{"bbox_inches":"tight"}``.
 
     fig : matplotlib.figure.Figure | None, optional
@@ -322,7 +322,7 @@ def plot_mask(
     Default is ``None``, meaning the plot won't be saved.
 
     save_args : dict, optional
-    The additional arugments passed to the ``fig.savefig`` call.
+    The additional arguments passed to the ``fig.savefig`` call.
     Default is ``{"bbox_inches":"tight"}``.
 
     fig : matplotlib.figure.Figure | None, optional
@@ -531,7 +531,7 @@ def plot_dirty_image(
     Default is ``None``, meaning the plot won't be saved.
 
     save_args : dict, optional
-    The additional arugments passed to the ``fig.savefig`` call.
+    The additional arguments passed to the ``fig.savefig`` call.
     Default is ``{"bbox_inches":"tight"}``.
 
     fig : matplotlib.figure.Figure | None, optional