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@ravel-lab

Ravel lab

Code releases from the laboratory of Jacques Ravel

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  1. VALENCIA VALENCIA Public

    VAginaL community state typE Nearest CentroId clAssifier

    Python 23 7

  2. VIRGO VIRGO Public

    Perl 15 9

  3. speciateIT speciateIT Public

    Fast, accurate taxonomic assignments for the human vaginal microbiota

    eC 11 3

  4. mgCST-classifier mgCST-classifier Public

    When used in concert with the vaginal non-redundant gene database (VIRGO), assigns metagenomic community state types (mgCSTs)

    R 4 1

  5. VIRGO2 VIRGO2 Public

    VIRGO2: A non-redundant gene catalog for the vaginal microbiome

    Python 4

  6. smith_thesis_2017 smith_thesis_2017 Public

    PostScript 1 2

Repositories

Showing 10 of 19 repositories
  • VIRGO2 Public

    VIRGO2: A non-redundant gene catalog for the vaginal microbiome

    ravel-lab/VIRGO2’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Feb 19, 2026
  • speciateIT Public

    Fast, accurate taxonomic assignments for the human vaginal microbiota

    ravel-lab/speciateIT’s past year of commit activity
    eC 11 AGPL-3.0 3 6 0 Updated Feb 11, 2026
  • kSanity Public

    kSanity: A k-Mer based approach for precision detection and quantification of bacterial strains from shotgun metagenomes

    ravel-lab/kSanity’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 20, 2025
  • STING_strain_concordance Public

    Metadata and code for analysis of urogenital bacterial strain concordance in the STING sexual network study.

    ravel-lab/STING_strain_concordance’s past year of commit activity
    R 0 0 0 0 Updated Jan 10, 2024
  • mgCST-classifier Public

    When used in concert with the vaginal non-redundant gene database (VIRGO), assigns metagenomic community state types (mgCSTs)

    ravel-lab/mgCST-classifier’s past year of commit activity
    R 4 GPL-3.0 1 1 0 Updated Oct 17, 2023
  • VALENCIA Public

    VAginaL community state typE Nearest CentroId clAssifier

    ravel-lab/VALENCIA’s past year of commit activity
    Python 23 MIT 7 9 0 Updated Apr 18, 2023
  • FastANI Public Forked from ParBLiSS/FastANI

    Fast Whole-Genome Similarity (ANI) Estimation

    ravel-lab/FastANI’s past year of commit activity
    C++ 0 Apache-2.0 70 0 0 Updated Jan 8, 2023
  • MotherDaughter Public
    ravel-lab/MotherDaughter’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Sep 19, 2022
  • VIRGO Public
    ravel-lab/VIRGO’s past year of commit activity
    Perl 15 MIT 9 11 0 Updated Sep 15, 2022
  • Two_year Public

    Repository containing the scripts used in the processing & analysis of the shotgun metagenomic data for the two year project.

    ravel-lab/Two_year’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Apr 26, 2022
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