0.5.0

[0.5.0] 2025-07-02

Added

• Adopt uv as the default manager.
• Adopt taskipy as the default task runner.
• Add choice of software manager from uv (default), conda or pip.
• Add choice of editor vscode.
• Add pyarrow, igraph, leidenalg, fa2-modified, fastcluster and pymde as dependencies.
• Add script to upgrade the template with latest package versions for uv: update_uv_requirements.sh

Changed

• Updated minimal Python version to 3.12.
• Updated package versions.
• Add lower bound for all optional dependencies.
• Changed project init.config to remove reference to 'gtex'.
• Remove various dependency groups in favor of a single dev group.

Removed

• Removed specific fields in build-system.
• Makefile targets for upload, processing and download of data.
• Removed PyQt5 dev dependency.
• pyproject.toml sections on pytest.

Full Changelog: 0.4.1...0.5.0