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Update architecture docs and add setup script#3

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google-labs-jules[bot] wants to merge 2 commits intomainfrom
docs-and-tools-update-7591861082312919113
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Update architecture docs and add setup script#3
google-labs-jules[bot] wants to merge 2 commits intomainfrom
docs-and-tools-update-7591861082312919113

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Updated documentation to reflect the PDAG architecture and added an Ubuntu setup script.


PR created automatically by Jules for task 7591861082312919113 started by @rgerhards

- Rewrite doc/internals.rst to correctly describe the PDAG architecture.
- Update doc/ai_architecture_map.md to fix function references.
- Add tools/setup_ubuntu.sh for easy dependency installation.
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- Rewrite doc/internals.rst to correctly describe the PDAG architecture.
- Update AGENTS.md and doc/ai_architecture_map.md to reflect current docs and architecture.
- Add tools/setup_ubuntu.sh for easy dependency installation.
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