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4 changes: 2 additions & 2 deletions labs/lab2-ngs_primer.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -357,9 +357,9 @@
"\n",
"Once you have sorted your BAM file, you can then index it. This enables tools, including SAMtools itself, and other genomic viewers to perform efficient random access on the BAM file, resulting in greatly improved performance. To do so, run:\n",
"```bash\n",
"samtools index alignments/sim_reads_aligned.bam\n",
"samtools index alignments/sim_reads_aligned.sorted.bam\n",
"```\n",
"This will create an index file named `alignments/sim_reads_aligned.bam.bai`."
"This will create an index file named `alignments/sim_reads_aligned.sorted.bam.bai`."
]
},
{
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