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Coerce bigBed columns based on autoSql types #16

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Merged
jayhesselberth merged 3 commits into from
Dec 10, 2025
Merged

Coerce bigBed columns based on autoSql types #16

jayhesselberth merged 3 commits into from
Dec 10, 2025

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@jayhesselberth jayhesselberth commented Dec 10, 2025

Summary

  • Parse autoSql schema in C++ and return properly typed columns
  • uint/int → R integer
  • float/double → R double
  • string/char/array types → R character
  • Remove convert parameter from read_bigbed() (always parse)
  • Simplify R code by moving all parsing to C++

Fixes #12

Test plan

  • All 46 existing tests pass
  • New test verifies column types match autoSql schema

🤖 Generated with Claude Code

jayhesselberth and others added 3 commits December 10, 2025 12:41
@jayhesselberth @claude
Coerce bigBed columns based on autoSql types (fixes #12)
e2eecec 
Parse autoSql schema in C++ and return properly typed columns: uint/int -> R integer, float/double -> R double, string/char/array types -> R character. Remove convert parameter from read_bigbed() as parsing is now always performed.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <[email protected]>
@jayhesselberth @claude
Update README to show coerced column types
2371d2f 
🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <[email protected]>
@jayhesselberth @claude
Fix R CMD check warnings
e052b23 
- Regenerate docs to remove convert parameter from read_bigbed.Rd

- Add .clang-format to .Rbuildignore

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <[email protected]>
@jayhesselberth jayhesselberth merged commit 6a8772d into main Dec 10, 2025
6 of 7 checks passed
@jayhesselberth jayhesselberth deleted the feature/autosql-type-coercion branch December 10, 2025 20:01
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Coerce bigBed columns based on autoSql types

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@jayhesselberth