Skip to content

Commit 518115e

Browse files
authored
Add explicit Conda environment creation step
Add step to create Conda environment before running Snakemake.
1 parent 03510ab commit 518115e

File tree

1 file changed

+4
-0
lines changed

1 file changed

+4
-0
lines changed

.github/workflows/snakemake_run.yml

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -21,6 +21,10 @@ jobs:
2121
environment-file: scraps_conda.yml
2222
auto-activate-base: false
2323

24+
- name: Create Conda Environment
25+
shell: bash -el {0}
26+
run: mamba env create -f scraps_conda.yml
27+
2428
- name: Run Snakemake
2529
shell: bash -el {0}
2630
run: |

0 commit comments

Comments
 (0)