robertoamarie/FMindexPy
Folders and files
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The current folder provides: > the FMindexPy.py script for creating all the data structures of a FM index starting from a single FASTA file, and storing them in a desired target folder. (For more details, consult the script itself) > a FASTA file downloaded from the publicly available NCBI's Sequence Viewer (https://www.ncbi.nlm.nih.gov/projects/sviewer/) > a subsetted version of the above FASTA file that meets the requirements of the FMindex.Py script > a YAML file to facilitate the download of the needed dependencies within a conda environment > an example of a sbatch script that has been used during the development phase to run and test the script with the above mentioned dataset