v2.6.15-pre-cran

beautier v2.6.15 (2025-08-08)

This is not a CRAN release, due to the CRAN team having holiday.

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Code coverage is 100.00%

BUG FIXES

• s_parameter_to_xml can handle an upper value of infinity
• create_s_parameter has NA as the default value for upper,
  as was already implicitly assumed when generating the BEAST2 XML

DEPRECATED AND DEFUNCT

• None

v2.6.14-pre-cran

beautier v2.6.14 (2025-08-07)

This release will not end up on CRAN, as the CRAN team has holidays.

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Clean lint

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.6.13-pre-cran

beautier v2.6.13 (2025-08-05)

This release is not uploaded to CRAN yet, due to Summer holiday.

NEW FEATURES

• Add is_beast2_input_file_with_tipdates to detect if a BEAST2
  XML input files indeed has tip dates stored
• Add check_tipdates_file to test a tip date file is valid
• Add read_tipdates_file to read a tip date file

MINOR IMPROVEMENTS

• Clearer error message when the tab-separated tip dates file does
  not use a tab as a separator. Empty lines are allowed.
• Clearer error message when the tip dates file has a header.
  A header is not allowed.
• Improved documentation in check_ functions

BUG FIXES

• A tipdates_filename must either be NA or be a path
  to an existing file, reported at #108
• Fix #109

DEPRECATED AND DEFUNCT

• None

v2.6.12

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Remove dependency on 'spelling'

BUG FIXES

• Fixes ropensci/babette#106

DEPRECATED AND DEFUNCT

• None

v2.6.11

• Removed dependency on the archieved package 'assertive'
• Follow latest CRAN guidelines

v2.6.9

Follow new CRAN guidelines.

v2.6.5

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Doc does not link to absent functions
• No tests take more than 5 seconds on CRAN infrastructure

BUG FIXES

• None

v2.6.4

NEW FEATURES

• None

MINOR IMPROVEMENTS

• There is no 'beautier' temporary folder created by the tests, not the
  examples, to comply with CRAN policy

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.6.2

NEW FEATURES

• None

MINOR IMPROVEMENTS

• check_empty_beautier_folder works correctly on Windows

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.6.1

NEW FEATURES

• Added check_empty_beautier_folder to make sure
  no temporary files are created

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• Removed all deprecated functions and function arguments
  that warn the user in the current CRAN version (v2.6)
• Internal functions clock_model_to_xml_prior_distr,
  tipdate_taxa_to_xml_tree, tree_priors_to_xml_operators
  work with infererence_model,
  deprecated other arguments
• Deprecated internal function clock_models_to_xml_prior_distr,
  redirect user to clock_model_to_xml_prior_distr
• Deprecated internal function tree_priors_to_xml_operators,
  redirect user to tree_prior_to_xml_operators
• Deprecated clock_models_to_xml_state,
  redirect user to clock_model_to_xml_state
• Deprecated clock_models_to_xml_operators,
  redirect user to clock_model_to_xml_operators
• Deprecated clock_models_to_xml_tracelog,
  redirect user to clock_model_to_xml_tracelog
• Deprecated mrca_priors_to_xml_tracelog,
  redirect user to mrca_prior_to_xml_tracelog
• Deprecated tree_models_to_xml_tracelog,
  redirect user to tree_model_to_tracelog_xml