fix: path

[maelle]

Not the complete PR I had in mind because I'm getting some trouble with terra.

Anyway the problem is that if the path is

#' dat <- read.csv(system.file("extdata",
#'                             "ssarp_Example_Dat_Dat.csv",
#'                             package = "ssarp"))

then on Ubuntu it won't be found because the filename is actually SSARP_Example_Dat_Dat.csv.

So the fix would be to go over those examples that fail, correcting the path to account for case-sensitivity, running document().

(my issue is that rlang things terra isn't installed but I have just installed it!)

[kmartinet]

Thank you so much for catching this, @maelle ! I chose to rename the file to ssarp_Example_Dat.csv since that was its intended name. I also found a capitalization mismatch in some uses of Patton_Anolis_Trimmed.tree that I fixed. R-CMD-check is officially passing as of the most recent commit!

[maelle]

Yay!! What is the pkgcheck's warning?

[kmartinet]

The pkgcheck warnings were Package has no continuous integration checks and R CMD check found 1 warning. I made a few edits today and now pkgcheck is succeeding again!!

The R CMD check warning was: LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character ό (U+03CC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. I fixed this today by ensuring that original uses of ό were updated to the proper ó (this must have originally been a copy/paste issue in one of my text editors).

The CI warning is still confusing to me, but maybe it was flagged because R CMD check had a warning?