Feat/mcp server cdisc#283

Merged

rubentalstra merged 16 commits intomainfrom

feat/mcp-server-cdisc

Jan 25, 2026

Commits on Jan 25, 2026

feat: restructure CDISC MCP server files and add PDF processing tool
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feat: refactor PDF processing tool for two-pass extraction and enhance section handling
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feat: enhance section heading detection and improve content normalization in PDF processing
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feat: update dependencies and refactor PDF text extraction for improved section handling
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feat: enhance TextChunk structure with indexing and parent-child relationships for improved PDF processing
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feat: add methods for chunk retrieval and section listing in IG processing
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feat: implement TUI for PDF processing with two-pass extraction and section validation
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feat: add phase timing and timeout handling for PDF processing
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feat: reorder IG entries for PDF processing to resolve timeout issues
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feat: update dependencies for PDF processing and enhance extraction with page-level progress
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feat: update SEND Implementation Guide structure and improve PDF loading with background processing
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feat: add Define-XML v2.1 support and enhance PDF processing with page tracking
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feat: enhance character boundary handling in search functionality and add comprehensive tests for index operations
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feat: update README with enhanced documentation for CDISC standards and available tools
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feat: enhance documentation for CDISC standards and MCP server usage in project files
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feat: update paths for embedded CDISC standards to reflect new directory structure
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