ci: Small cleanup of the Github Actions in the PR workflow

[martin-g]

• replace the not maintained actions-rs/toolchain action with dtolnay/rust-toolchain
• replace actions-rs/cargo with direct usage of cargo
• • replace actions-rs/clippy with direct usage of cargo clippy (it even shows that there are some problems in the code)
• add build on Linux ARM64. Often Bioconda recipes fail to build on linux-aarch64 because they use a version of rust-htslib that has/had problems for this platform

[martin-g]

• (it even shows that there are some problems in the code)

I could push fix for those if the maintainers of the repo say it is OK to do it in this PR!

[coveralls]

Pull Request Test Coverage Report for Build 13408697687

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

• For more information on this, see Tracking coverage changes with pull request builds.
• To avoid this issue with future PRs, see these Recommended CI Configurations.
• For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

• 33 of 45 (73.33%) changed or added relevant lines in 10 files are covered.
• 127 unchanged lines in 15 files lost coverage.
• Overall coverage decreased (-0.5%) to 79.254%

---

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
src/bam/record_serde.rs	0	1	0.0%
src/bcf/record.rs	6	8	75.0%
src/tbx/mod.rs	0	2	0.0%
src/bam/record.rs	15	22	68.18%

Files with Coverage Reduction	New Missed Lines	%
src/bam/pileup.rs	1	85.45%
src/utils.rs	1	85.71%
src/bam/ext.rs	3	92.23%
src/bam/index.rs	3	54.55%
src/bcf/index.rs	3	65.63%
src/faidx/mod.rs	3	84.91%
src/bam/buffer.rs	4	51.67%
src/bam/mod.rs	4	82.1%
src/bcf/buffer.rs	5	59.38%
src/bcf/mod.rs	5	76.21%

Totals
Change from base Build 12126773228:	-0.5%
Covered Lines:	2506
Relevant Lines:	3162

---

💛 - Coveralls

[brainstorm]

Very much needed, thanks @martin-g ;)

Please fix the lint errors if you are ok doing so?

[martin-g]

Please fix the lint errors if you are ok doing so?

Doing it!

[martin-g]

OK! All is green!
Please review when you have time!

[brainstorm]

Thanks much @martin-g, LGTM.

@johanneskoester, I've been approving the workflow runs and checking the changes on almost each commit, any objections from your side?

[brainstorm]

@martin-g Actually, can you squash your commits a bit? CI tests tend to be a bit verbose on commit history, other than that the changes look great and code looks even better now too ;)

[martin-g]

can you squash your commits a bit?

Done!

[dlaehnemann]

@martin-g We are implementing the same changes over in the rust-bio repository and I was wondering if it was a deliberate choice to set the runners in rust.yml to ubuntu-22.04 instead of ubuntu-latest? And if so, why?

[martin-g]

The OS images (22.04 vs 24.04) come with different set of preinstalled software.
Some package was missing in the ARM64 image but I don't remember which one exactly.
Try with -latest first and use it if it works!