gh-40417: bump cibuildwheel version and various other versions
    
these versions are old, so we bump them. Also add new pre-reqs to our
Dockerfile.

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- [ ] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation and checked the documentation
preview.

### ⌛ Dependencies

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URL: #40417
Reported by: Dima Pasechnik
Reviewer(s): Tobias Diez

Author: Release Manager

.github/workflows/dist.yml

@@ -260,7 +260,7 @@ jobs:
         # Installing pipx follows the approach of https://github.com/pypa/cibuildwheel/pull/1743
         id: python
         with:
-          python-version: "3.8 - 3.12"
+          python-version: "3.11 - 3.13"
           update-environment: false
 
       - name: Bootstrap
@@ -283,7 +283,7 @@ jobs:
         #
         # omit sagemath-{meataxe,sirocco} for now -- needs sagemath-modules
         run: |
-          "${{ steps.python.outputs.python-path }}" -m pip install cibuildwheel==2.18.0
+          "${{ steps.python.outputs.python-path }}" -m pip install cibuildwheel==3.0.1
           export PATH=build/bin:$PATH
           echo CIBW_BEFORE_ALL="( $(sage-print-system-package-command debian --yes --no-install-recommends install $(sage-get-system-packages debian $SPKGS)) || $(sage-print-system-package-command fedora --yes --no-install-recommends install $(sage-get-system-packages fedora $SPKGS | sed s/pkg-config/pkgconfig/)) || ( $(sage-print-system-package-command homebrew --yes --no-install-recommends install $(sage-get-system-packages homebrew $SPKGS)) || $(sage-print-system-package-command alpine --yes --no-install-recommends install $(sage-get-system-packages alpine $SPKGS)) || echo error ignored) ) && if cp /host/sage-\$AUDITWHEEL_PLAT/config.status . 2>/dev/null; then chmod +x config.status; fi && if [ -x ./config.status ]; then ./config.status; else ./configure --enable-build-as-root ${{ startsWith(matrix.os, 'ubuntu') && '--prefix=/host/sage-\$AUDITWHEEL_PLAT' || '' }} && cp config.status prefix/; fi && MAKE=\"make -j6\" make V=0 $TARGETS_PRE && (echo \"sage_conf @ file://\$(pwd)/pkgs/sage-conf\" && echo \"sage_setup @ file://\$(pwd)/pkgs/sage-setup\") > constraints.txt" >> "$GITHUB_ENV"
           mkdir -p unpacked

docker/Dockerfile

@@ -90,7 +90,7 @@ RUN ln -s /usr/bin/sage /usr/bin/sagemath
 # We need gcc/g++ and libstdc++-10-dev to allow compilation of cython at run-time from the notebook.
 # We also install sudo for the sage user, see below.
 RUN apt-get -qq update \
-    && apt-get -qq install -y --no-install-recommends gfortran gcc g++ libstdc++-10-dev sudo openssl \
+    && apt-get -qq install -y --no-install-recommends gfortran gcc g++ libstdc++-10-dev sudo openssl bzip2 libbz2-dev pkg-config\
     && apt-get -qq clean \
     && rm -r /var/lib/apt/lists/*
 # Sage refuses to build as root, so we add a "sage" user that can sudo without a password.