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test update with updated rlen calculation in htslib #2402

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Merged
pd3 merged 1 commit into from
May 16, 2025
+13 −13
Merged

test update with updated rlen calculation in htslib #2402

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6 changes: 3 additions & 3 deletions test/norm.rmdup.3.1.out
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##contig=<ID=1>
#CHROM POS ID REF ALT QUAL FILTER INFO
1 1 . A <DEL> . . SVLEN=-1000
1 1 . A <DEL> . . SVLEN=-2000
1 1 . A <DEL> . . SVLEN=-3000
1 8 . T <DEL> . . SVLEN=-10
1 8 . T <DEL> . . SVLEN=-11
1 8 . T <DEL> . . SVLEN=-12
1 18 . AC A . . .
2 changes: 1 addition & 1 deletion test/norm.rmdup.3.2.out
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Expand Up @@ -3,5 +3,5 @@
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##contig=<ID=1>
#CHROM POS ID REF ALT QUAL FILTER INFO
1 1 . A <DEL> . . SVLEN=-1000
1 8 . T <DEL> . . SVLEN=-10
1 18 . AC A . . .
18 changes: 9 additions & 9 deletions test/norm.rmdup.3.vcf
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Expand Up @@ -2,14 +2,14 @@
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##contig=<ID=1>
#CHROM POS ID REF ALT QUAL FILTER INFO
1 10 . C <DEL> . . SVLEN=-1000
1 10 . C <DEL> . . SVLEN=-1000
1 10 . C <DEL> . . SVLEN=-2000
1 10 . C <DEL> . . SVLEN=-1000
1 10 . C <DEL> . . SVLEN=-3000
1 10 . C <DEL> . . SVLEN=-2000
1 10 . C <DEL> . . SVLEN=-1000
1 10 . C <DEL> . . SVLEN=-3000
1 10 . C <DEL> . . SVLEN=-2000
1 10 . C <DEL> . . SVLEN=-10
1 10 . C <DEL> . . SVLEN=-10
1 10 . C <DEL> . . SVLEN=-11
1 10 . C <DEL> . . SVLEN=-10
1 10 . C <DEL> . . SVLEN=-12
1 10 . C <DEL> . . SVLEN=-11
1 10 . C <DEL> . . SVLEN=-10
1 10 . C <DEL> . . SVLEN=-12
1 10 . C <DEL> . . SVLEN=-11
1 20 . CCC CC . . .
1 20 . CC C . . .
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