Bump tifffile from 2024.8.30 to 2025.3.13 in /envs

[dependabot]

Bumps tifffile from 2024.8.30 to 2025.3.13.

Release notes

Sourced from tifffile's releases.

v2025.3.13

Read and write TIFF files

Tifffile is a Python library to

1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, and Philips DP formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

• Change bytes2str to decode only up to first NULL character (breaking).
• Remove stripnull function calls to reduce overhead (#285).
• Deprecate stripnull function.

v2025.2.18

Read and write TIFF files

Tifffile is a Python library to

1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, and Philips DP formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

• Fix julian_datetime milliseconds (#283).
• Remove deprecated dtype arguments from imread and FileSequence (breaking).
• Remove deprecated imsave and TiffWriter.save function/method (breaking).
• Remove deprecated option to pass multiple values to compression (breaking).
• Remove deprecated option to pass unit to resolution (breaking).
• Remove deprecated enums from TIFF namespace (breaking).

... (truncated)

Changelog

Sourced from tifffile's changelog.

2025.3.13

• Pass 5110 tests.
• Change bytes2str to decode only up to first NULL character (breaking).
• Remove stripnull function calls to reduce overhead (#285).
• Deprecate stripnull function.

2025.2.18

• Fix julian_datetime milliseconds (#283).
• Remove deprecated dtype arguments from imread and FileSequence (breaking).
• Remove deprecated imsave and TiffWriter.save function/method (breaking).
• Remove deprecated option to pass multiple values to compression (breaking).
• Remove deprecated option to pass unit to resolution (breaking).
• Remove deprecated enums from TIFF namespace (breaking).
• Remove deprecated lazyattr and squeeze_axes functions (breaking).

2025.1.10

• Improve type hints.
• Deprecate Python 3.10.

2024.12.12

• Read PlaneProperty from STK UIC1Tag (#280).
• Allow 'None' as alias for COMPRESSION.NONE and PREDICTOR.NONE (#274).
• Zarr 3 is not supported (#272).

2024.9.20

• Fix writing colormap to ImageJ files (breaking).
• Improve typing.
• Drop support for Python 3.9.

Commits

• cd8e330 Release v2025.3.13
• 961c315 Update CHANGES.rst
• 007e3ff Update tifffile/tifffile.py
• a5e954e Update tests/test_tifffile.py
• 6968553 Update tifffile/init.py
• 0c4a521 Update setup.py
• f1d053c Release v2025.2.18
• 860ecad Update CHANGES.rst
• 60257e7 Update tifffile/tifffile.py
• 8aa1f42 Update tests/test_tifffile.py
• Additional commits viewable in compare view

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[yoda-vid]

@dependabot rebase

[dependabot]

Looks like tifffile is no longer updatable, so this is no longer needed.