A single stressor experiment exploring the microbial community during embryonic development of Montipora capitata corals when exposed to increasing levels of PVC leachate.
This analysis uses:
- QIIME2 verson 2023.9 and version 2023.5
- qiime2 q2-picrust2-2023.2_0 plugin
- Maaslin2
- PERMANOVA Quick Reference - One-page summary of PERMANOVA for microbiome data
- PERMANOVA Comprehensive Guide - Complete theoretical explanation and best practices
- PERMANOVA Analysis Code - Working examples with all distance metrics
- Core Metrics Visualization - Beta diversity PCoA plots
- Compositional Analysis - CLR transformation and Aitchison distance
- Mantel Test Quick Reference - One-page summary of Mantel tests for multi-omics correlation
- Mantel Test Guide - Comprehensive guide for correlation analysis between microbiome and RNA-seq data
- Mantel Test Analysis - Executable workflow for microbiome-transcriptome correlation
- Mantel Test Example - Step-by-step example using actual file paths from this repository
- Taxa Barplot Guide - Taxonomic composition visualization
- MaAsLin2 Guide - Differential abundance analysis
- Example Usage - General workflow examples