Skip to content

Add section on annotating large instances for model training#9425

Open
Albane-dlv wants to merge 4 commits intomasterfrom
docs-edit-albane
Open

Add section on annotating large instances for model training#9425
Albane-dlv wants to merge 4 commits intomasterfrom
docs-edit-albane

Conversation

@Albane-dlv
Copy link
Copy Markdown

I added a section on annotating large instances for model training.

@coderabbitai
Copy link
Copy Markdown
Contributor

coderabbitai bot commented Mar 27, 2026

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info
⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro

Run ID: 6af9307d-273a-4aec-8167-903698a7e503

📥 Commits

Reviewing files that changed from the base of the PR and between d4a2f84 and 439e8e5.

⛔ Files ignored due to path filters (1)
  • docs/tutorials/images/tutorial_trainingdata_08_soma_ground_truth_example.png is excluded by !**/*.png
📒 Files selected for processing (1)
  • docs/tutorials/trainingdata_annotation.md

📝 Walkthrough

Walkthrough

Documentation update to docs/tutorials/trainingdata_annotation.md adding guidance on instance segmentation, distinguishing it from dense neuron segmentation. Introduces labeling conventions, segment ID assignment, and handling large structures at reduced resolution magnifications with practical recommendations.

Changes

Cohort / File(s) Summary
Training Data Annotation Documentation
docs/tutorials/trainingdata_annotation.md
Added instance segmentation guidance distinguishing from dense segmentation, including labeling practices for structures of interest, segment ID assignment, and handling large instances (somata, nuclei, blood vessels) at reduced resolution with 3D verification reminders. Updated opening paragraph to note applicability to instance segmentation with additional considerations.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

Suggested labels

documentation

Poem

🐰 A guide grows wise with careful thought,
Where instances are neatly caught,
At smaller scopes, we work with care,
Each segment marked, each structure fair,
The bunny cheers—annotation's art!

🚥 Pre-merge checks | ✅ 3
✅ Passed checks (3 passed)
Check name Status Explanation
Title check ✅ Passed The title accurately reflects the main change: a new section on annotating large instances for model training was added to the documentation.
Description check ✅ Passed The description is directly related to the changeset, stating that a section on annotating large instances for model training was added.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

✏️ Tip: You can configure your own custom pre-merge checks in the settings.

✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch docs-edit-albane

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

Comment @coderabbitai help to get the list of available commands and usage tips.

@Albane-dlv Albane-dlv requested a review from hotzenklotz March 27, 2026 13:20
Copy link
Copy Markdown
Member

@hotzenklotz hotzenklotz left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

👍

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants