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@Zethson Zethson commented Jun 7, 2025

@Zethson Zethson added this to the 1.12.0 milestone Jun 7, 2025
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codecov bot commented Jun 7, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 77.39%. Comparing base (2b3e605) to head (23b5d3e).
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3675      +/-   ##
==========================================
+ Coverage   77.23%   77.39%   +0.15%     
==========================================
  Files         115      115              
  Lines       12393    12394       +1     
==========================================
+ Hits         9572     9592      +20     
+ Misses       2821     2802      -19     
Files with missing lines Coverage Δ
src/scanpy/_settings/__init__.py 86.29% <ø> (+0.37%) ⬆️
src/scanpy/plotting/_anndata.py 85.55% <ø> (ø)
src/scanpy/plotting/_docs.py 100.00% <ø> (ø)
src/scanpy/plotting/_preprocessing.py 86.79% <ø> (ø)
src/scanpy/plotting/_stacked_violin.py 86.13% <ø> (ø)
src/scanpy/plotting/_tools/__init__.py 76.76% <ø> (ø)
src/scanpy/plotting/_tools/paga.py 66.60% <ø> (ø)
src/scanpy/plotting/_tools/scatterplots.py 83.13% <ø> (ø)
src/scanpy/plotting/_utils.py 70.83% <100.00%> (+3.81%) ⬆️

Signed-off-by: Lukas Heumos <[email protected]>
@flying-sheep flying-sheep changed the title Deprecate save parameter of plots chore: deprecate save parameter of plots Nov 3, 2025
@flying-sheep flying-sheep marked this pull request as ready for review November 3, 2025 13:32
@flying-sheep flying-sheep merged commit 86b520c into main Nov 3, 2025
9 of 11 checks passed
@flying-sheep flying-sheep deleted the feature/deprecate_save branch November 3, 2025 14:17
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Saving plots results in a prefixed filename, regardless of sc.settings.figdir

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