cleanup (#8)

* cleanup

* Cleanup

Author: grst

.cruft.json

@@ -4,8 +4,8 @@
     "checkout": null,
     "context": {
         "cookiecutter": {
-            "project_name": "scverse-doc",
-            "package_name": "scverse_doc",
+            "project_name": "scverse-tutorials",
+            "package_name": "scverse_tutorials",
             "project_description": "A very interesting piece of code",
             "author_full_name": "Your Name",
             "author_email": "[email protected]",

README.md

@@ -1,4 +1,4 @@
-# scverse-doc
+# scverse tutorials
 
 [![Tests][badge-tests]][link-tests]
 [![Documentation][badge-docs]][link-docs]
@@ -7,50 +7,4 @@
 [link-tests]: https://github.com/your_github_username/scverse-doc/actions/workflows/test.yml
 [badge-docs]: https://img.shields.io/readthedocs/scverse-doc
 
-A very interesting piece of code
-
-## Getting started
-
-Please refer to the [documentation][link-docs]. In particular, the
-
--   [API documentation][link-api].
-
-## Installation
-
-You need to have Python 3.8 or newer installed on your system. If you don't have
-Python installed, we recommend installing [Mambaforge](https://github.com/conda-forge/miniforge#mambaforge).
-
-There are several alternative options to install scverse-doc:
-
-<!--
-1) Install the latest release of `scverse-doc` from `PyPI <https://pypi.org/project/scverse-doc/>`_:
-
-```bash
-pip install scverse-doc
-```
--->
-
-1. Install the latest development version:
-
-```bash
-pip install git+https://github.com/your_github_username/scverse-doc.git@main
-```
-
-## Release notes
-
-See the [changelog][changelog].
-
-## Contact
-
-For questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].
-If you found a bug, please use the [issue tracker][issue-tracker].
-
-## Citation
-
-> t.b.a
-
-[scverse-discourse]: https://discourse.scverse.org/
-[issue-tracker]: https://github.com/your_github_username/scverse-doc/issues
-[changelog]: https://scverse-doc.readthedocs.io/latest/changelog.html
-[link-docs]: https://scverse-doc.readthedocs.io
-[link-api]: https://scverse-doc.readthedocs.io/latest/api.html
+Collection of tutorials for scverse packages.

docs/api.md

@@ -6,9 +6,6 @@
 :hidden: true
 :maxdepth: 1
 
-api.md
-changelog.md
-developer_docs.md
 references.md
 
 notebooks/example

docs/changelog.md

@@ -73,7 +73,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3.6.8 64-bit",
    "language": "python",
    "name": "python3"
   },
@@ -87,7 +87,12 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.13"
+   "version": "3.6.8"
+  },
+  "vscode": {
+   "interpreter": {
+    "hash": "916dbcbb3f70747c44a77c7bcd40155683ae19c65e1c03b4aa3499c5328201f1"
+   }
   }
  },
  "nbformat": 4,

docs/index.md

@@ -4,31 +4,25 @@ requires = ["hatchling"]
 
 
 [project]
-name = "scverse-doc"
+name = "scverse-tutorials"
 version = "0.0.1"
-description = "A very interesting piece of code"
+description = "Tutorials for single-cell analysis with scverse packages"
 readme = "README.md"
 requires-python = ">=3.8"
 license = {file = "LICENSE"}
 authors = [
-    {name = "Your Name"},
+    {name = "scverse team"},
 ]
 maintainers = [
-    {name = "Your Name", email = "[email protected]"},
-]
-urls.Documentation = "https://scverse-doc.readthedocs.io/"
-urls.Source = "https://github.com/your_github_username/scverse-doc"
-urls.Home-page = "https://github.com/your_github_username/scverse-doc"
-dependencies = [
-    "anndata",
-    # for debug logging (referenced from the issue template)
-    "session-info"
+    {name = "scverse team", email = "[email protected]"},
 ]
+urls.Documentation = "https://scverse.org/scverse-tutorials"
+urls.Source = "https://github.com/scverse/scverse-tutorials"
+urls.Home-page = "https://github.com/scverse/scverse-tutorials"
+dependencies = []
 
 [project.optional-dependencies]
 dev = [
-    # CLI for bumping the version number
-    "bump2version",
     "pre-commit"
 ]
 doc = [
@@ -41,23 +35,6 @@ doc = [
     "ipykernel",
     "sphinx-copybutton",
 ]
-test = [
-    "pytest",
-    "pytest-cov",
-]
-
-[tool.coverage.run]
-source = ["scverse_doc"]
-omit = [
-    "**/test_*.py",
-]
-
-[tool.pytest.ini_options]
-testpaths = ["tests"]
-xfail_strict = true
-addopts = [
-    "--import-mode=importlib",  # allow using test files with same name
-]
 
 [tool.isort]
 include_trailing_comma = true